Protein Data Bank
- 3D 10ME: SemiClosed Eco-ePEC: Cryo-EM structure of Eco RNAP his-elemental paused elongation complex with a semi-closed active site (closed TL and SI3, open ...
- 3D 10MF: CBR9379 bound Open1 Eco-ePEC: Cryo-EM structure of Eco RNAP his-elemental paused elongation complex with an open active site (open TL, SI3 and RH-FL)
- 3D 10MG: CBR9379 bound Open2 Eco-ePEC: Cryo-EM structure of Eco RNAP his-elemental paused elongation complex with an open active site (open TL, SI3 and RH-FL)
- 3D 10MI: Closed Mtb-EC: Cryo-EM structure of Mtb RNAP elongation complex (substrate loading mimic) with a closed active site (closed TL and RH-FL)
- 3D 10MJ: Open Mtb-EC: Cryo-EM structure of Mtb RNAP elongation complex (substrate loading mimic) with an open active site (open TL and RH-FL)
- 3D 10MK: SemiClosed Mtb-EC: Cryo-EM structure of Mtb RNAP elongation complex (substrate loading mimic) with a semiclosed active site (closed TL, open RH-FL)
- 3D 10ML: AAP-SO2 bound Open Mtb-EC: Cryo-EM structure of Mtb RNAP elongation complex (substrate loading mimic) with an open active site (open TL and RH-FL)
- 3D 11FW: Cryo-EM structure of the bacteriophage N4 virion RNA polymerase (open plug state)
- 3D 11GO: Cryo-EM structure of the bacteriophage N4 virion RNA polymerase (transcription initiation complex)
- 3D 11GP: Cryo-EM structure of the bacteriophage N4 virion RNA polymerase (closed plug state)
PDB Nitrogen Cycle
- 3D 21LA: Olep, Cytochrome P450 epoxidase involved in the biosynthesis of murideoxycholic acid (MDCA)
- 3D 24XI: Crystal structure of the diaminopimelate dehydrogenase from Pyrococcus sp. in its holo form
- 3D 27LJ: the structure of cis-isoeugenol synthase AtaIGS1 mutant
- 3D 29VD: Crystal structure of the human METTL3-METTL14 in complex with STC-15
- 3D 29VJ: Crystal structure of the human METTL3-METTL14 in complex with STM-2457
- 3D 30EW: XN-IL lectin from Xenorhabdus nematophila in complex with lactose
- 3D 31CJ: Reduced E.coli aerotaxis receptor
- 3D 31CK: Oxidized E.coli aerotaxis receptor in MH-cap free state
- 3D 36IQ: Structure of de novo designed doxorubicin binding protein with doxorubicin bound
- 3D 9OSA: Crystal Strucutre of SwnH1
PDB Photosynthesis
- 3D 27LJ: the structure of cis-isoeugenol synthase AtaIGS1 mutant
- 3D 31CJ: Reduced E.coli aerotaxis receptor
- 3D 31CK: Oxidized E.coli aerotaxis receptor in MH-cap free state
- 3D 9MNC: Human 80S ribosome bound to small molecule SW393071
- 3D 9RKM: Crystal structure of [FeFe]-hydrogenase CbA5H from Clostridium beijerinckii in Hinact state
- 3D 9SDD: Crystal structure of ERb-ERc heterodimer from Schizochytrium sp.
- 3D 9SRP: Structure of the Diels-Alderase ChlE3 in complex with cofactor FAD
- 3D 9TN7: F420-nitrite reductase from Methanocaldococcus infernus at 1.58 A resolution
- 3D 9YGM: Babesia divergens ribosome structure by single-particle cryo-EM (3D class3, E-site tRNA)
- 3D 9YXB: Babesia divergens ribosome structure by single-particle cryo-EM (3D class1, A-, P-, and E-site tRNAs and mRNA)
PDB PFAS Degradation
- 3D 9HLN: Crystal structure of MnmA D100C mutant from Streptococcus pneumoniae with [4Fe-4S] cluster in complex with formate
- 3D 9RFP: Peptidedeformylase XisD in complex with formiate
- 3D 9Q1E: Cryo-EM Structure of the MgtA Tetramer at 2.7 A Resolution
- 3D 9Q6O: Cryo-EM Structure of MgtA in the E2-P State at 2.7 A Resolution
- 3D 9VBQ: Crystal structure of FXR in complex with agonist XJ02862-S2
- 3D 9VBR: Farnesoid X Receptor Agonists_FXR fused with a HD3 peptide
- 3D 9ZLK: Cryo-EM structure of MgtA with bound AMPPCP and magnesium
- 3D 24UU: Crystal structure of Endonuclease IV from Chlamydophila pneumoniae
- 3D 9Z11: Crystal Structure of the Poly(Hexamethylene Adipamide) (Nylon66) Hydrolase Nyl50 in Complex with Butyrate at Room Temperature
- 3D 24HR: Human KRAS G12D (GDP-bound) in complex with macrocyclic peptide inhibitor AP6252
Project Gutenberg
- Leviathan EPUB PDF
- The Scarlet Letter EPUB PDF
- Macbeth EPUB PDF
- The Complete Works of Shakespeare EPUB PDF
- A Tale of Two Cities EPUB PDF
- Bleak House EPUB PDF
- Adventures of Huckleberry Finn EPUB PDF
- The Souls of Black Folk EPUB PDF
- Jane Eyre EPUB PDF
- The Adventures of Tom Sawyer EPUB PDF
- The Iliad EPUB PDF
- The Odyssey EPUB PDF
- The Hound of the Baskervilles EPUB PDF
- Pygmalion EPUB PDF
- The War of the Worlds EPUB PDF
GitHub bioRxiv
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anthropics/knowledge-work-plugins
22176
Python
Open source repository of plugins primarily intended for knowledge workers to us...
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WaymentSteeleLab/Dyna-1
78
Jupyter Notebook
Model for predicting micro-millisecond motions from protein sequence and/or stru...
-
aicell-lab/bioengine
5
Jupyter Notebook
BioEngine is a distributed AI platform that brings the power of cloud computing ...
-
bluenote-1577/savont
45
Rust
Amplicon sequencing variants from 16s ONT R10.4 / HiFi long reads
-
jhuapl-bio/taxtriage
75
JavaScript
TaxTriage is a Nextflow workflow designed to agnostically identify and classify ...
-
Aperivue/medsci-skills
169
Python
Claude Code skills for medical research — literature search, reporting guideline...
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JEFworks-Lab/STcompare
8
R
STcompare is an R package for comparing spatial gene expression patterns across ...
-
AI-sandbox/snputils
50
Python
A Python library for processing genomes with ease
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leipzig/awesome-reproducible-research
391
Python
A curated list of reproducible research case studies, projects, tutorials, and m...
-
styx-api/niwrap
27
Python
Modern Neuroimaging Made Simple
Synthetic Biology
- High-Throughput Screening and Mechanistic Elucidation of RhlA Mutants for Enhanced Rhamnolipid Biosynthesis Guided by EGCA-Net and Molecular Dynamics Simulations.
- Brassinosteroid signalling suppresses chlorophyll biosynthesis via BGH2-GLK modules to ensure proper cotyledon greening during de-etiolation.
- Functional Suppression of SCAP Triggers Endoplasmic Reticulum Stress-Dependent Ferroptosis by Impairing Cholesterol Metabolism in Gastric Cancer.
- CREAT: A CRISPR-Based Genome Trimming Strategy for Systematic Identification of Dispensable Regions and Rapid Genome Reduction.
- To Biotic or Abiotic: Biohybrid Systems for Artificial Photosynthesis.
- Enhanced citric acid production via aconitase co-inhibition strategy using L-cysteine HCl-resistant Aspergillus niger NA-CYS3.
- Live imaging of bacterial actin MreBs from Spiroplasma causing helicity switching of a minimal synthetic cell.
- Phytohormone supplementation for omega-3 production in microalgae and its potential integration with wastewater cultivation.
- Microbial Metabolic Strategies for Environmental Detoxification: From Enzymatic Mechanisms to Synthetic Biology and Omics.
- Gnotobiology: from 19th-century global foundations to 21st-century omics - six decades of Czech contribution to microbiome research.
- CRISPR/Cas9-Mediated Mutagenesis of OsERF94 Enhances Pre-Harvest Sprouting in Rice.
- Larix gmelinii UGPase enhances vegetative growth in transgenic poplar through an HYH-mediated positive feedback loop.
- De Novo Biosynthesis of Polyphyllin V in Nicotiana benthamiana through Pathway Reconstruction and UDP-Sugar Engineering.
- Mechanobiology-Driven Metabolic Reprogramming: Integrative Roles of YAP/TAZ Signaling and Extracellular Matrix Dynamics.
- Combined Proteomic and Metabolomic Analyses of Palmitoleic Acid-Associated Responses to Salt Stress in Zygosaccharomyces rouxii.
Biotechnology
- BetaDescribe: Providing rich descriptions from protein sequences.
- Desert Hedgehog mediates stem Leydig cell differentiation through Ptch2/Gli1/Sf1 signaling axis.
- Laparoscopic Ovum Pick-up For In Vivo Oocyte Retrieval In Alpacas.
- Cell-Free In Vitro mRNA Translation In Drosophila Lysates.
- One-stage Assay Factor VIII Activity Reflects AAV-Derived Factor VIII-Enhanced Thrombin Activation and Predicts Phenotype.
- Menin-MLL inhibitors enhance JUND activity in MLLr leukemic cells contributing to tumorigenesis and therapy resistance.
- Biodegradable Acoustic Targeting for Ultrasound-Supported Gene Therapy (BATUS) in Glioblastoma.
- Computational Tool Choice Impacts CRISPR Spacer-Proto spacer Detection.
- CREAT: A CRISPR-Based Genome Trimming Strategy for Systematic Identification of Dispensable Regions and Rapid Genome Reduction.
- Potentiated Maturation of hPSC-Derived Dopaminergic Neurons via Convergent Genetic and Small Molecule Modulation.
- Decoding the functional landscape of long non-coding RNAs in hepatocellular carcinoma: molecular mechanisms, clinical implications, and therapeutic prospects.
- CRISPR/Cas9-Mediated Mutagenesis of OsERF94 Enhances Pre-Harvest Sprouting in Rice.
- Sensitizing carbapenem-resistant Klebsiella pneumoniae using a compact Cascade-Cas3 system.
- Effects of CRISPR technology on agricultural sustainability: global applications and turkish perspective.
- Integrative transcriptional regulatory networks governing cereal root responses to heavy metals and drought.
AI & Machine Learning
- A highly efficient and interpretable framework for high-precision lithological identification integrating SERS and XGBoost.
- Comment on "Excellent agreement between automated deep learning-based and manual diffusion-weighted imaging infarct volume measurements in hyperacute stroke".
- AI-assisted Python automation of mean-centering spectrophotometric methods with comprehensive sustainability assessment.
- Continuous multi-omics pathway enrichment analysis resolves hidden functional heterogeneity.
- Prediction of laser welding molten pool light intensity distribution based on an artificial neural network.
- Movement-based assistive technology for control of digital applications in severe motor impairment: a scoping review.
- High-Throughput Screening and Mechanistic Elucidation of RhlA Mutants for Enhanced Rhamnolipid Biosynthesis Guided by EGCA-Net and Molecular Dynamics Simulations.
- A Futures Framework for Clinical AI Governance: Anticipating Emerging Risks, Shifting Roles, and Regulatory Challenges.
- Using a Large Language Model to Support Thematic Analysis of Patient Experiences in Chronic Illness Management: Comparative Qualitative Study.
- Evaluation of a Digital Intervention for Monitoring and Improving Medication Adherence Among Real-World e-Consumers of HIV Preexposure Prophylaxis in China: Protocol for a Randomized Controlled Trial.
- Operationalizing Digital Health Equity in Artificial Intelligence-Enabled Patient Decision Aids for Older Adults: Mixed Methods Study.
- Automated Prediction of Glasgow Coma Scale Scores From Unstructured Electronic Health Records Using Natural Language Processing: Development and Validation Study.
- DNA Damage Response Alterations and Immune Checkpoint Blockade Outcomes Across Multiple Cancers.
- Training humans to detect AI-generated faces.
- Assessment of diverse deep brain stimulation targets uncovers a common neural pathway for instantaneous antidepressant effects in rats.
Neuroscience
- Potential role of tirabrutinib as part of an optimal treatment strategy for lymphomatosis cerebri: illustrative case.
- Right internal carotid artery C7 segment aneurysm with carotid occlusion following traumatic brain injury: illustrative case.
- Distal internal carotid artery dissection after carotid endarterectomy for a high cervical lesion suggesting an Eagle-like mechanism of shunt-related injury: illustrative case.
- Dynamic bilateral vertebral artery occlusion owing to os odontoideum mimicking basilar artery occlusion: illustrative case.
- Delayed identification and treatment of a cervicomedullary spinal vascular lesion following angiogram-negative, high-grade subarachnoid hemorrhage: illustrative case.
- Dopamine transporter and beyond: evolving targets and combination strategies in stimulant use disorder.
- Muscle-Brain Crosstalk in Alzheimer's Disease: Exercise-Associated FNDC5/Irisin Pathways in Preclinical Models - A Systematic Review.
- IRG1/Itaconate Inhibits Microglial Senescence-Like Transition by Modulating Mitochondrial Dynamics through Rhoa Alkylation in Subarachnoid Hemorrhage.
- Automated Prediction of Glasgow Coma Scale Scores From Unstructured Electronic Health Records Using Natural Language Processing: Development and Validation Study.
- Incidence and outcome of paediatric cardioembolic stroke: a nationwide population-based study.
- Relationships between bilateral tapping skills and brain gray matter volumes: a voxel-based morphometry study.
- Unraveling delusional misidentification: A neuropsychological and experimental exploration of a new case of reduplication syndrome.
- Assessment of diverse deep brain stimulation targets uncovers a common neural pathway for instantaneous antidepressant effects in rats.
- A Stratified Analysis of Body Perception, Interoception and Somatosensory Brain Processing in Healthy Adults.
- Nighttime light exposure is associated with metabolic dysfunction in schizophrenia: A cross-sectional analysis of the LENS study.
Climate Science
- Correction for Wang et al., The role of reduced aerosol masking from air pollutant emission reductions in recent global warming acceleration (2013-2023).
- European beech reproduction is not reduced by drought, including the 2003, 2018, and 2022 extremes.
- Ad-based social media interventions increase belief accuracy and generate pro-social opinions among non-news readers.
- Dexamethasone restores blood-brain barrier integrity in an in vitro heatstroke model.
- Boring into groundwater impact predictions of hardrock mines in Canada reveals inconsistent modelling timelines, monitoring plans, and consideration of climate change.
- A Socioeconomic Assessment of Projected Health Impacts From Outdoor Air Pollution Under Current European Climate Policy: A Modelling Study.
- The synergistic impact of low-carbon and innovative city construction on carbon intensity.
- Microbial bioindicators for multidimensional assessment of environmental alterations and ecosystem functioning.
- Contrasting vegetation height and elevation shape near-surface thermal responses more strongly than slope orientation during summer in northern Patagonia.
- Carbon Sequestration Dynamics and Ecosystem Service Valuation in the Borana Rangeland, Southern Ethiopia: Linking Ecology and Carbon Finance.
- Rethinking One Health: Microbial Foundations for Ecological Governance.
- Occurrence of Antimicrobial Resistance in Kocuria rhizophila Bacteria Isolated From Salmo munzuricus (Teleostei: Salmonidae) Samples in Natural Resources.
- Extreme weather events and pathways to mental health outcomes in sub-Saharan Africa: A systematic review.
- PLANTGIFT: AN EFFECTIVE TEACHER WORKSHOP MODEL FOR INCREASING PLANT-BASED LABORATORY EXPERIENCES IN SECONDARY SCIENCE CLASSROOMS.
- Assessing the mineral accretion technique (MAT) for marine benthic restoration: a scoping review highlighting procedural weaknesses and evidence gaps.
Medicine
- Pan-cancer analysis identifies GPRIN1 as a prognostic biomarker and promoter of cell proliferation in pancreatic cancer.
- Multi-omics characterization of radiation-induced cerebellar remodeling and tumorigenic transcriptional programs.
- Stereoselective synthesis of 1,2-annulated C-glycosides via palladium-catalyzed intramolecular annulation of C-aryl glycosides.
- Smart biomaterials in the dimensional revolution of bioprinting: From 2D to 6D for advanced biomedical applications.
- Malvidin and its glycosides in cancer treatment: Mechanisms, synergies and drug delivery strategies.
- Unusual morphologic features in molecularly defined high-grade sarcomas of the uterus.
- Pelvic venous disorders and orthostatic intolerance: A systematic review of diagnostic associations and treatment outcomes.
- Evaluation of the remineralisation potential of a novel peptide GA-C16G2 on artificial root dentine lesions.
- Multifrequency tabletop magnetic resonance elastography for ex-vivo characterization of murine intestinal tissue biomechanics.
- Potential role of tirabrutinib as part of an optimal treatment strategy for lymphomatosis cerebri: illustrative case.
- Embolization of a pediatric choroid plexus papilloma as a stand-alone treatment strategy: illustrative case.
- Delayed identification and treatment of a cervicomedullary spinal vascular lesion following angiogram-negative, high-grade subarachnoid hemorrhage: illustrative case.
- Pneumocystis pneumonia in non-HIV immunocompromised patients in 2026: evolving therapeutic standards.
- CD39 and PD-L1 co-expression may serve as potential indicators for evaluating the efficacy of neoadjuvant immunotherapy in esophageal squamous cell carcinoma.
- A Genetically Encoded Fluorescent Sensor for Protein Arginine Phosphorylation.
Genomics
- Continuous multi-omics pathway enrichment analysis resolves hidden functional heterogeneity.
- Implementing Timely Germline Genetic Testing for Patients With Pancreatic Cancer Using a Genetics Copilot for Point-of-Care Education and Health Assessment.
- Integrating DNA Mutations and RNA Expression of Cancer Driver Genes in Asian Rare Cancers: A Pan-Cancer Analysis.
- Population-Specific Probabilistic Risk Assessment of PFOA for Ovarian Function Using PBTK Translation of Data from Subacute Exposure of Mice.
- Temporal Immunomodulation via Methylation Epigenetics Counteracts Immune Evasion by Expanding the Time Window.
- Revisiting the genome assembly of Lupinus species reveals differential diploidization after a shared whole-genome duplication.
- Host life-history strategy is a critical determinant of virulent phage infection propensity.
- A Toxin-Based Counter-Selection System for Markerless Gene Deletion and High-Density Tn5 Transposon Mutagenesis in Pectobacterium brasiliense.
- Decoding The Epitranscriptome: In Silico Insights Into m6A Regulatory Network In Breast Cancer.
- Characterization of genomic diversity in bacteriophages infecting Rhodococcus.
- Development of CypriSSR: a genome-wide, chromosome-level microsatellite database for multiple cyprinidae species.
- NSD2 Degradation Remediates the Oncogenic Cistrome in t(4;14) Multiple Myeloma.
- Whole-genome sequencing of Listeria monocytogenes from maternal and neonatal clinical isolates in Kuwait.
- Genomic insights into the resistome, mobilome and functional adaptation of Achromobacter xylosoxidans across clinical and environmental contexts.
- The Food and Microbiome Longitudinal Investigation (FAMiLI) Study: an Asian American (AsA) Enriched Multi-ethnic Environmental Cohort.
Immunology
- A blind spot of human T cell immunology: epitope specificity in secondary lymphoid organs.
- A trispecific GLP-1/anti-GIPR/FGF21 peptibody exhibits favorable metabolic effects in a diet-induced obesity model.
- Adverse Events After Same-Day COVID-19 and Influenza Vaccination Versus Influenza Vaccination Alone : A Target Trial Emulation.
- Assessment of Immunization Status Following Non-HSCT Chemotherapy-treated Pediatric Leukemia Survivors.
- Metabolic Modulation in Cancer Care: The Potential Role of Glucagon-Like Peptide-1 Receptor Agonists.
- MHC class II on melanoma cells regulates the anti-tumor T cell response.
- Eosinophil Essentials: Identification and Assessment of Activity.
- Evaluating the cost-effectiveness of adjuvanted influenza vaccine in the older adult population in the Netherlands.
- Incidence and Radiographic Progression of Rheumatoid Arthritis in Anti-Citrullinated Protein Antibody-Positive Individuals: A Six-Year Population- Based Cohort Study.
- Standardized Flow Cytometry Assay Using Dried Recombinant Antibody Panels for CAR T Cell Characterization.
- Analysis of the current status and influencing factors of influenza vaccination among medical staff in multiple regions of China.
- Correlates of protection against African swine fever virus identified by a systems immunology approach.
- Direct contact between iPSC-derived macrophages and hepatocytes drives reciprocal acquisition of Kupffer cell identity and hepatocyte maturation.
- Retrospective Comparative Study of Tacrolimus and Cyclophosphamide Treatment in Pediatric Lupus Nephritis.
- Intracranial Breast Cancer Brain Metastases Mouse Model for Immune and Stromal Cells Characterization in Meninges and Olfactory Bulb.
Microbiology
- Functional analysis of IRF1/2 homolog in immune regulation of the sea urchin Strongylocentrotus intermedius.
- Charting light harvesting in purple bacteria in vivo.
- A Toxin-Based Counter-Selection System for Markerless Gene Deletion and High-Density Tn5 Transposon Mutagenesis in Pectobacterium brasiliense.
- Trichoderma enriches Burkholderia via cross-feeding of degradation intermediates to enhance atrazine degradation and alleviate soybean phytotoxicity.
- Changes In Lower Respiratory Tract Bacterial Isolates In ICU Patients Before and After the COVID-19 Pandemic.
- Correlates of protection against African swine fever virus identified by a systems immunology approach.
- Prevalence, distribution, and phylogenetics of the tick-borne relapsing fever spirochete Borrelia turicatae in the soft tick Ornithodoros turicata americanus in Florida.
- Seasonal dynamics in sheep fecal microbiome and soil bacterial communities under grazing management.
- Establishment of A Mouse Sepsis-Induced Immunosuppression Model By Intranasal Instillation of Bacteria.
- Human Macrophages Secrete Both Interferon α and Interferon β Proteins During Infection with Mycobacterium tuberculosis.
- Microbiome-Targeted Antibiotics Provide No Additional Microbiologic or Inflammatory Benefit during Cystic Fibrosis Pulmonary Exacerbations: Results from the CFMATTERS Trial.
- Whole-genome sequencing of Listeria monocytogenes from maternal and neonatal clinical isolates in Kuwait.
- Genomic insights into the resistome, mobilome and functional adaptation of Achromobacter xylosoxidans across clinical and environmental contexts.
- Genome-based reclassification of Desulfovibrio sp. G11 (DSM 7057) as Desulfovibrio falkowii with an emended description of the species.
- The Food and Microbiome Longitudinal Investigation (FAMiLI) Study: an Asian American (AsA) Enriched Multi-ethnic Environmental Cohort.
Evolutionary Biology
- Host-guest engineering in a two-dimensional anionic porphyrinic metal-organic framework via cationic bodipy encapsulation for boosting photocatalytic H₂ evolution.
- Evolution of quantitative traits with background selection.
- The dynamic genomes of Salvinia reshape our understanding of fern chromosome evolution.
- In Situ Fabricated Three-Dimensional Composite Electrode of Mo-Ni(3)S(2)/Nickel Foam for Enhanced Electrocatalytic Hydrogen Evolution.
- Prevalence, distribution, and phylogenetics of the tick-borne relapsing fever spirochete Borrelia turicatae in the soft tick Ornithodoros turicata americanus in Florida.
- Leaf Size in Conifers: Global Associations With Climate and Evolutionary History.
- From Arethusa to the Operating Room: The Evolution of the Cervico-Mental Angle From Classic Greece to Contemporary Aesthetic Surgery.
- Suppressing Charge Carrier Recombination in Bulk Heterojunction Organic Photocatalyst via Improving Molecular Crystallinity and Reducing Electron-Phonon Coupling for Efficient Hydrogen Evolution Reaction.
- Resolving translational challenges in cancer biology through yeast experimental evolution.
- Clonal Metamorphosis: Deconstructing MPN Evolution with Single-Cell and Spatial Multi-Omics.
- Bibliometric and clinical review of nuss bar stabilization techniques: a four-phase evolution toward lower bar displacement rates (1998-2025).
- Congenital hypoganglionosis: phenotype-based outcomes and evolution of diagnosis and management-a systematic review.
- Evolution of Adaptive Non-Shivering Thermogenesis in Mammals.
- Three-dimensionally printed mesoporous bioactive glass for craniomaxillofacial bone regeneration: Material evolution, functional mechanisms, and clinical translation.
- Space-confined synthesis of Co(0.5)Fe(0.5)S(2) nanocubes as an efficient oxygen evolution electrocatalyst toward overall water splitting.
Molecular Ecology
- Polycyclic aromatic hydrocarbons in tropical mangrove soils affected by a major oil spill: vertical distribution, persistence, and mixed sources.
- Weight loss and gut microbial changes associated with semaglutide among people living with schizophrenia receiving clozapine or olanzapine: An open-label 24-week semaglutide intervention and 76-week trial.
- Constructing a lower-bound estimate of the global number of insect species on a hyperdiverse empirical foundation.
- Seasonal dynamics in sheep fecal microbiome and soil bacterial communities under grazing management.
- Development of CypriSSR: a genome-wide, chromosome-level microsatellite database for multiple cyprinidae species.
- Buckwheat: A Sustainable Alternative Crop Under Changing Climate.
- Chromosome-Level Genome Assembly of the Sea Urchin Glyptocidaris crenularis and Sex Chromosome Identification.
- Effects of CRISPR technology on agricultural sustainability: global applications and turkish perspective.
- Passive acoustic monitoring (PAM) to assess benthic communities associated with offshore wind farms: insights and future directions.
- Unveiling the microhabitat puzzle: how spatial heterogeneity shapes cave invertebrate biodiversity across scales.
- Genetic landscape of the Brahmin population of Gujarat, India, using X-chromosome STR markers.
- Interplay of Aquatic and Riparian Variables in Two Anthropogenically-Influenced Small Stream Catchments.
- Perceived Effects of Agri-Environmental Management Practices on Public Good Delivery.
- Rethinking One Health: Microbial Foundations for Ecological Governance.
- Integrating active and passive environmental DNA sampling into coral reef monitoring: implications for community-based stewardship in Hawai'i.
arXiv Physics
- PDF Drift Behavior in a Bounded-Confidence Opinion Model with Media Influence
- PDF Optimal parameterization of nonequilibrium generalized master equations from discrete-time experimental data
- PDF Surface Water Wave Scattering and the Hydrotope
- PDF A Two-Step Ensemble Score Filter for Data Assimilation in Partially Observed Systems
- PDF The Allee Effect in Compressible Flows
- PDF Efficient targeting of arbitrary excited states with quantum inverse power iteration through filtering polynomials
- PDF Coexisting Regular and Chaotic Dynamics in the Dysprosium Feshbach Spectrum
- PDF A fast sum-of-Gaussians algorithm for the high-dimensional fractional Fokker-Planck equation
- PDF Universality of Bubble Coalescence in Electrolytic Media
- PDF Radiation tolerance of a diamond radiation detector for space use
- PDF Vacuum Fluctuation-Induced State Switching in Degenerate Optical Parametric Oscillators
- PDF Direct Observation of X-ray Double-Slit Interference in Momentum Space
- PDF Observations and empirical functions for the ocean surface wave spectrum
- PDF A Weakly Nonlinear Theory of Zonal-Flow Forcing in Gyrokinetic Turbulence
- PDF A single platform with van der Pauw geometry for measurement of Seebeck coefficient, resistivity, and Hall effect of thin films
arXiv Mathematics
- PDF The multiply iterated law of the iterated logarithm: game-theoretic foundations of sequential detection boundaries
- PDF Infinite ECH Capacities and Anosov Flows
- PDF Pairwise Reflection Symmetry in Generalized Latin Rectangles
- PDF Optimal Deployment of Electric Aircraft for Canadian Domestic Flights
- PDF Surprises in Proper Positive-Only Learning
- PDF Second-Order KKT Guarantees for Bregman ADMM in Nonconvex and Non-Lipschitz Optimization
- PDF Divisible Arm Lengths, Crystal Reflections, and Enumeration of Newly Found Decomposition Columns
- PDF A perfectly matched layer for damping vertically propagating waves in the compressible Boussinesq equations
- PDF VGB for Masked Diffusion Model: Efficient Test-time Scaling for Reward Satisfaction and Sample Editing
- PDF On the Bourgain--Brezis--Mironescu spaces over Carleson tents
- PDF Composing Quantum Instruments
- PDF Unconditional Well-posedness for the MMT Equation on the Torus
- PDF Commutative topological algebras on translation-invariant reproducing kernel Hilbert spaces
- PDF A flexibility result for polynomial entropy of pointwise periodic homeomorphisms
- PDF Sharp First-Order Lower Bounds under Sublevel $α$-Polyak-Lojasiewicz Conditions
arXiv Computer Science
- PDF DexCompose: Reusing Dexterous Policies for Multi-Task Manipulation with a Single Hand
- PDF PerceptionRubrics: Calibrating Multimodal Evaluation to Human Perception
- PDF StructSplat: Generalizable 3D Gaussian Splatting from Uncalibrated Sparse Views
- PDF WARP-RM: A Warp-Augmented Relative Progress Reward Model for Data Curation
- PDF Drift Behavior in a Bounded-Confidence Opinion Model with Media Influence
- PDF Pairwise Reflection Symmetry in Generalized Latin Rectangles
- PDF Surprises in Proper Positive-Only Learning
- PDF Which Nash Equilibrium? Solver-Dependent Selection on Zero-Sum Nash Polytopes
- PDF Second-Order KKT Guarantees for Bregman ADMM in Nonconvex and Non-Lipschitz Optimization
- PDF VGB for Masked Diffusion Model: Efficient Test-time Scaling for Reward Satisfaction and Sample Editing
- PDF CacheMPC: Certified Cached Model Predictive Control for Quadruped Locomotion
- PDF Democratic ICAI: Debating Our Way to Steering Principles from Preferences
- PDF Composing Quantum Instruments
- PDF Bridging Ab Initio Symmetries and Global Nuclear Masses with Interpretable Neural Networks
- PDF V-TSN: A Software-Defined TSN Overlay for General-Purpose Networks
arXiv Quantitative Biology
- PDF Habitual lifestyle timing explains circadian timing, but daily lifestyle changes do not, in free-living humans across 2000 days
- PDF Discrete Event Population Updates: finding game theoretic emergent behaviour in queueing systems with simulation
- PDF Reconstructability of evolutionary intermediates in generative epistatic landscapes
- PDF Heterogeneous synaptic motifs bridge microscale structure and macroscale nonlinear dynamics
- PDF Towards coevolution-aware ancestral sequence reconstruction
- PDF Two-Stage Fine-Tuning for Protein Sequence Generation with Targeted Amino-Acid Composition
- PDF CANNs: A Toolkit for Research on Continuous Attractor Neural Networks
- PDF Explainable AI for Biodiversity Monitoring and Ecological Image Analysis
- PDF Reconstructing the Developmental Trajectory of Adipocytes in Human Adipose Tissue Using Single-Cell RNA Sequencing
- PDF Characterisation of reactive Nash equilibria in repeated additive games
- PDF BEAGLE 4.1: A high-performance library for computation on phylogenetic trees across diverse parallel architectures
- PDF Distribution-based deep multiple instance learning for tumor proportion scoring in NSCLC
- PDF Modelling chronic stress as an excitatory-inhibitory perturbation in recurrent working-memory networks
- PDF GRAFT: Biological Graph and Hypergraph Benchmarks for Linked Gene Expression and Phenotypic Trait Prediction in Arabidopsis thaliana
- PDF Deep learning model emulators for marine biogeochemistry forecasting from days to decades
arXiv Quantitative Finance
- PDF Optimal Deployment of Electric Aircraft for Canadian Domestic Flights
- PDF (In)Efficient Market States and Rough Volatility Detected via Grunwald-Letnikov Fractional Derivative
- PDF Methods for Uncertainty Representation in Risk Management: A Comparative Review and Decision-Oriented Framework
- PDF CryptoGAT: Are Time Series Models Effective for Cryptocurrency Forecasting?
- PDF The Decision Geometry of Covariance Estimation for the Global Minimum-Variance Portfolio under Heavy Tails
- PDF Valuing American options and Flexible Forwards contracts in time-dependent models
- PDF Endogenous Reinsurance Pricing in Large Competitive Insurance Markets: Finite-Player and Mean Field Analysis
- PDF Pretrained Time-Series Foundation Models for Financial Return Forecasting
- PDF Conditional Leibniz Derivative Estimation with an Application to American Call Min-Options
- PDF A sharp order-three obstruction to the aggregation of conditional price-of-risk attribution
- PDF Data-Driven Duration Management -- Term Structure Forecasting Using Machine Learning
- PDF Robust Hedging Valuation Adjustment under Liquidity--Demand Stress
- PDF Portfolio Optimization for Commodity ETFs under Heavy-Tailed Returns
- PDF Geometrically convex return risk measures on AM-algebras
- PDF Matrix Approximation of Bachelier Option Prices and Greeks under Stochastic Volatility models