Protein Data Bank
- 3D 10ME: SemiClosed Eco-ePEC: Cryo-EM structure of Eco RNAP his-elemental paused elongation complex with a semi-closed active site (closed TL and SI3, open ...
- 3D 10MF: CBR9379 bound Open1 Eco-ePEC: Cryo-EM structure of Eco RNAP his-elemental paused elongation complex with an open active site (open TL, SI3 and RH-FL)
- 3D 10MG: CBR9379 bound Open2 Eco-ePEC: Cryo-EM structure of Eco RNAP his-elemental paused elongation complex with an open active site (open TL, SI3 and RH-FL)
- 3D 10MI: Closed Mtb-EC: Cryo-EM structure of Mtb RNAP elongation complex (substrate loading mimic) with a closed active site (closed TL and RH-FL)
- 3D 10MJ: Open Mtb-EC: Cryo-EM structure of Mtb RNAP elongation complex (substrate loading mimic) with an open active site (open TL and RH-FL)
- 3D 10MK: SemiClosed Mtb-EC: Cryo-EM structure of Mtb RNAP elongation complex (substrate loading mimic) with a semiclosed active site (closed TL, open RH-FL)
- 3D 10ML: AAP-SO2 bound Open Mtb-EC: Cryo-EM structure of Mtb RNAP elongation complex (substrate loading mimic) with an open active site (open TL and RH-FL)
- 3D 11FW: Cryo-EM structure of the bacteriophage N4 virion RNA polymerase (open plug state)
- 3D 11GO: Cryo-EM structure of the bacteriophage N4 virion RNA polymerase (transcription initiation complex)
- 3D 11GP: Cryo-EM structure of the bacteriophage N4 virion RNA polymerase (closed plug state)
PDB Nitrogen Cycle
- 3D 21LA: Olep, Cytochrome P450 epoxidase involved in the biosynthesis of murideoxycholic acid (MDCA)
- 3D 24XI: Crystal structure of the diaminopimelate dehydrogenase from Pyrococcus sp. in its holo form
- 3D 27LJ: the structure of cis-isoeugenol synthase AtaIGS1 mutant
- 3D 29VD: Crystal structure of the human METTL3-METTL14 in complex with STC-15
- 3D 29VJ: Crystal structure of the human METTL3-METTL14 in complex with STM-2457
- 3D 30EW: XN-IL lectin from Xenorhabdus nematophila in complex with lactose
- 3D 31CJ: Reduced E.coli aerotaxis receptor
- 3D 31CK: Oxidized E.coli aerotaxis receptor in MH-cap free state
- 3D 36IQ: Structure of de novo designed doxorubicin binding protein with doxorubicin bound
- 3D 9OSA: Crystal Strucutre of SwnH1
PDB Photosynthesis
- 3D 27LJ: the structure of cis-isoeugenol synthase AtaIGS1 mutant
- 3D 31CJ: Reduced E.coli aerotaxis receptor
- 3D 31CK: Oxidized E.coli aerotaxis receptor in MH-cap free state
- 3D 9MNC: Human 80S ribosome bound to small molecule SW393071
- 3D 9RKM: Crystal structure of [FeFe]-hydrogenase CbA5H from Clostridium beijerinckii in Hinact state
- 3D 9SDD: Crystal structure of ERb-ERc heterodimer from Schizochytrium sp.
- 3D 9SRP: Structure of the Diels-Alderase ChlE3 in complex with cofactor FAD
- 3D 9TN7: F420-nitrite reductase from Methanocaldococcus infernus at 1.58 A resolution
- 3D 9YGM: Babesia divergens ribosome structure by single-particle cryo-EM (3D class3, E-site tRNA)
- 3D 9YXB: Babesia divergens ribosome structure by single-particle cryo-EM (3D class1, A-, P-, and E-site tRNAs and mRNA)
PDB PFAS Degradation
- 3D 9HLN: Crystal structure of MnmA D100C mutant from Streptococcus pneumoniae with [4Fe-4S] cluster in complex with formate
- 3D 9RFP: Peptidedeformylase XisD in complex with formiate
- 3D 9Q1E: Cryo-EM Structure of the MgtA Tetramer at 2.7 A Resolution
- 3D 9Q6O: Cryo-EM Structure of MgtA in the E2-P State at 2.7 A Resolution
- 3D 9VBQ: Crystal structure of FXR in complex with agonist XJ02862-S2
- 3D 9VBR: Farnesoid X Receptor Agonists_FXR fused with a HD3 peptide
- 3D 9ZLK: Cryo-EM structure of MgtA with bound AMPPCP and magnesium
- 3D 24UU: Crystal structure of Endonuclease IV from Chlamydophila pneumoniae
- 3D 9Z11: Crystal Structure of the Poly(Hexamethylene Adipamide) (Nylon66) Hydrolase Nyl50 in Complex with Butyrate at Room Temperature
- 3D 24HR: Human KRAS G12D (GDP-bound) in complex with macrocyclic peptide inhibitor AP6252
Project Gutenberg
- White Fang EPUB PDF
- Moby Dick EPUB PDF
- The Iliad EPUB PDF
- Thumbelina EPUB PDF
- The Prince EPUB PDF
- The Turn of the Screw EPUB PDF
- Little Women EPUB PDF
- Anthem EPUB PDF
- Jane Eyre EPUB PDF
- David Copperfield EPUB PDF
- Romeo and Juliet EPUB PDF
- Grimms' Fairy Tales EPUB PDF
- Pride and Prejudice EPUB PDF
- Thus Spake Zarathustra EPUB PDF
- Crime and Punishment EPUB PDF
GitHub bioRxiv
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zying106/looplook
6
R
looplook is a versatile R package for target assignment and functional annotatio...
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nwamsley1/Pioneer.jl
21
Julia
CLI toolkit for fast analysis of DIA proteomics experiments and in silico librar...
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blahner/mosaic-preprocessing
6
Shell
Preprocessing code for MOSAIC data
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move37-labs/nucleobench
27
Python
Repository for "NucleoBench: A Large-Scale Benchmark of Neural Nucleic Acid Desi...
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FJingxian/JanusX
32
Rust
A high-performance, ALL-in-ONE suite for quantitative genetics that unifies geno...
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flyark/AFM-LIS
80
Jupyter Notebook
Local Interaction Score (LIS) for structure prediction analysis
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flyark/LIVIA
22
HTML
LIVIA (Local Interaction VIsualization and Analysis) — Analyze and visualize pro...
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anthropics/knowledge-work-plugins
22080
Python
Open source repository of plugins primarily intended for knowledge workers to us...
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lyndonkl/claude
128
Python
Agents, skills and anything else to use with claude
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at-cg/billi
15
C++
Enumerating bubbles in pangenome graphs
Synthetic Biology
- Hsa_circ_0003258 drives serine biosynthesis and docetaxel resistance in prostate cancer by enhancing IGF2BP3-mediated PSAT1 mRNA stability.
- Jasmonic acid and PpeMYC2 regulate peach fruit ripening by controlling polyamine levels and anthocyanin biosynthesis.
- Establishment of a Protoplast Transformation Method in the Oleaginous Yeast Rhodotorula toruloides.
- Complete genome sequence of a yellow-pigmented Pantoea sp. XAF26B01_ASV70 isolated from blue-winged warbler feces.
- Age-dependent epigenetic control of flavonoid metabolism underlies chemical defenses in ancient Ginkgo biloba.
- Green synthesis of silver nanoparticles using Swertia chirayita and their antioxidant and anticancer potential.
- Defective cuticle-derived signals enhance extracellular ATP response and plant immunity.
- The role of coumarin biosynthesis in modulating plant drought responses: insights from PpBMT overexpression in Arabidopsis.
- Integrated physiological, hormonal, and transcriptomic analyses reveal pistil responses to pollen sources of varying compatibility in 'Fengtang' plum (Prunus salicina).
- Complete genome sequence of Streptomyces californicus ADR1, an anti-infective, anti-biofilm and anti-oxidant producing endophyte isolated from the medicinal plant Datura metel.
- Inhibition of ADSS2-mediated de novo AMP biosynthesis re-sensitizes acute myeloid leukemia to BH3 mimetics.
- Redox-based dual-substrate fermentation enhances sustainable production of 3-hydroxypropionic acid by recombinant E. coli.
- SUMOylation-stabilized G6PD orchestrates metabolic rewiring for oxidative stress survival and chemoresistance in HCC via a PKCδ-phosphorylation trigger.
- Gut microbiome composition and predicted functions relate to growth and behavior in a Japanese preschool cohort.
- Discovery of an isoflavone biosynthetic pathway in Iridaceae plants.
Biotechnology
- Function through shape: An overview of DNA G-quadruplexes in transcriptional regulation.
- Establishment of a Protoplast Transformation Method in the Oleaginous Yeast Rhodotorula toruloides.
- Natural extracts for the treatment of atherosclerosis.
- Molecular Pathogenesis of and Regenerative Strategies for Osteonecrosis of the Femoral Head.
- HSP90α-USP7-DNMT1 Axis Drives Hepatocellular Carcinoma Recurrence After Microwave Ablation by Disrupting ACSS3-Mediated Propionate Metabolism.
- Antibiotic susceptibility pattern of bacteria in patients with middle ear infection.
- Cell type-specific contextualisation of the human phenome: towards the systematic treatment of all rare diseases.
- A streamlined approach for gene editing in non-obese diabetes (NOD) mice via CRISPR/Cas9.
- Reflections on emerging therapies for inherited retinal diseases following a community education event: A qualitative exploration.
- In Vivo Quantitative Detection of PEGylated Macromolecules by Magnetic Resonance Spectroscopy.
- Inhibition of ADSS2-mediated de novo AMP biosynthesis re-sensitizes acute myeloid leukemia to BH3 mimetics.
- Re-administration of AAV-mediated gene therapy for OTOF-related deafness: a single-arm trial.
- The role of CFTR in spermatogenesis and sperm quality.
- CRISPR's next act: the companies editing the epigenome to treat disease.
- Challenges and strategic assessment of biohydrogen development via a fuzzy Delphi-SWOT-QSPM framework.
AI & Machine Learning
- Rethinking prediction of sudden cardiac arrest: The role of electrocardiography in forecasting low-incidence, high-consequence events.
- A mechanism-guided framework for prioritizing membrane-interaction anti-Vibrio peptides from peptidomics data.
- Ternary pattern-driven feature extraction and self-attending GRU for clinical score prediction in Alzheimer's disease.
- Identifying subgroups of ICU patients with high mortality rates using machine learning: A nationwide, population-based study.
- Deep learning reconstruction dual-energy computed tomography for gastrointestinal system tumors: low-kiloelectron volt imaging vs routine imaging.
- Current Status and Future Projections of Artificial Intelligence-Assisted Ultrasonography and Needle Visibility Methods in Regional Anesthesia.
- Gonarthrosis Advisor vs ChatGPT-5: quality and readability of artificial intelligence-generated patient education for knee osteoarthritis.
- Beyond the Rotisserie: Dispelling the Myths of Intravesical Therapy and Pioneering a Precision Future for Bladder Cancer.
- Evaluation of surgical recommendation algorithms in hallux valgus cases using ChatGPT models: an artificial intelligence approach based on 50 simulated scenarios.
- Differential Effects of Prenatal Depression and Anxiety on Infant Sleep: Dual-Pathway Mechanisms Involving the HPA Axis and the Gut-Brain Axis.
- Multidimensional chemoprofiling of hybrid and wild Broussonetia papyrifera: sustainable utilization analysis of wild resource substitutes.
- AI-assisted molecular docking and molecular dynamics simulations for predicting off-target effects of AKT1 ATP-competitive inhibitors.
- Equity-by-design for socially assistive robots as digital health tools.
- Orchestrator multi-agent clinical decision support system for secondary headache diagnosis in primary care.
- Multi-kingdom gut microbiota analyses define bacterial-fungal interplay in multiple type 2 diabetes cohorts.
Neuroscience
- Cervical nerve root contribution to diaphragm motor innervation revisited via intraoperative clinical and neurophysiological observations.
- Wilson disease presenting with isolated neurological manifestations.
- From PET to targeted radionuclide therapy in the Brain: The emerging role of radiometal-based platforms.
- Evaluation of Serum Long Non-Coding RNAs HOXA Transcript at the Distal Tip (HOTTIP), Colon Cancer-Associated Transcript 1 (CCAT1), and Colon Cancer-Associated Transcript 2 (CCAT2) as Potential Biomarkers in Schizophrenia.
- Revolutionizing Nursing Education: A Game-Changing Brain-Based Teaching Approach Takes Center Stage.
- Differential Effects of Prenatal Depression and Anxiety on Infant Sleep: Dual-Pathway Mechanisms Involving the HPA Axis and the Gut-Brain Axis.
- Utility of Multi-Analyte Protein Assay to Distinguish Multiple Sclerosis Clinical Relapse from Pseudoexacerbation.
- Neuropsychological impairments in emotion recognition compared to general cognition: profiles across six different neurological disorders.
- Neurotherapeutic roles of the protective arm of the renin-angiotensin system: from inflammation to cognitive rescue.
- From antimicrobial-impregnated to standard catheters for external ventricular drainage: a single-center before-and-after cohort study.
- Brain correlates of cognitive reserve in offspring of patients with schizophrenia or bipolar disorder.
- Rational design of pyrazole-oxime hybrids as dual-targeting agents for glioma and breast cancer brain metastasis.
- Characterization of intracranial pressure variations in ventricular and subarachnoid spaces of the rat brain.
- Neuropsychological assessment of tetanus anaphylactic shock and medical trauma.
- In vitro and in vivo activity of the aspartic protease inhibitor CWHM-117 against Toxoplasma gondii.
Climate Science
- Toward a Low-Energy Direct-Air Capture Cycle by Reversible Proton-Intercalation-Mediated Alkalization.
- Changes in primary productivity and carbon balance of intertidal macroalgal assemblages.
- Managed grazing as a strategy for climate change mitigation: a commentary on 'Grazing-driven ontogenetic aging and reproductive shifts in a dominant Stipa grass mediate community reorganization'.
- Predicting range expansion of three tropical fruit flies and risks to pome and stone fruit production in temperate regions.
- Trend of fishery carbon sink in Chinese bivalve aquaculture from 2004 to 2023.
- Deciphering global patterns of marine microbial community assembly and network stability.
- Carbon footprint of waste generated in orthopaedic cases in Pakistan: a pilot descriptive study.
- Hydrogeochemical Formation Mechanisms and Water Supply Suitability of Groundwater in the Northern Grassland Region on Inner Mongolia Plateau, China.
- A dataset of greenhouse gas emissions and nutrition profiles for 320 dishes from eight major cuisines of China.
- Europe's record heatwave: does the continent have a new climate?
- Vegetation greenness dynamics and responses to climate and human activities under land cover change in Guangdong, China.
- A coupled heat-cold island network framework for urban heat island mitigation: a case study of Central Fuzhou.
- Microplastic retention within infiltration basins used for managed aquifer recharge: effectiveness and key controlling factors.
- Microeukaryotes are more vulnerable than picoeukaryotes to reservoir salinization: Evidence from multi-year high-frequency monitoring.
- Assessing the drought response of the wild potato relative Solanum brevicaule from contrasting environments.
Medicine
- Precision targeting of CLDN18.2: A new therapeutic paradigm for gastric cancer.
- Function through shape: An overview of DNA G-quadruplexes in transcriptional regulation.
- Intermittent fasting ameliorates Sjögren's syndrome-related dry eye through a preponderant bile acid-Akkermansia homeostasis establishment.
- Characterization of metal composition and molecular weight distribution in Shilajit.
- Clinicopathologic spectrum and prognostic determinants in biopsy-proven thrombotic microangiopathy.
- Eating disorder severity and treatment outcome across race/ethnicity, sexual orientation, and socioeconomic status: Intersectional inequities in a clinical sample.
- From PET to targeted radionuclide therapy in the Brain: The emerging role of radiometal-based platforms.
- From scriptural reference to scientific evidence a critical review of the nutritional composition and functional food potential of foods described in classical Islamic texts.
- Hsa_circ_0003258 drives serine biosynthesis and docetaxel resistance in prostate cancer by enhancing IGF2BP3-mediated PSAT1 mRNA stability.
- Mitochondrial DNA Content Modulates Chemosensitivity and Cellular Adaptation in Glioblastoma Cells.
- O-arm navigation vs. freehand screw placement in adolescent idiopathic scoliosis: A comparative analysis of screw size and reoperation rates.
- Efficacy and Safety of Mirabegron 25 mg Versus Oral Desmopressin 120 mcg in Treatment of Primary Nocturnal Enuresis.
- Gender Perceptions Among Women Undergoing In Vitro Fertilization Treatment: The Role of Sociodemographic Factors.
- The Research of Lactylation in the Field of Reproduction.
- Recent changes in effects of predictors of tobacco cessation in formal treatment.
Genomics
- Occlusal abnormalities and temporomandibular joint osteoarthritis: A narrative review of cross-scale mechanical-metabolic-immune mechanisms.
- Conserved trans-regulatory logic and evolving cis-modules drive the diversification of inducible diterpenoid biosynthetic gene clusters across the Oryzoideae.
- Key outcomes from a stakeholder workshop on genomic newborn screening: recommended next steps for the integration of genomics into public health programs.
- GMSA: A Graph Matching and Point Cloud Registration-Based Method for Spatial Transcriptomics Data Alignment.
- Sphingomonas chlorellae sp. nov., Isolated from Outdoor Photobioreactor Culturing Chlorella sp. HS2 with Soy Sauce Wastewater.
- Extended-spectrum beta-lactamases from French veal calves: WGS-based data will help build targeted AMR mitigation strategies.
- Phosphoethanolamine modification of lipid A found in five distinct Akkermansia species.
- Metabolic alterations in the tumor microenvironment influence the anti-tumor immune function of CD8(+) T cells via epigenetic modifications.
- Whole-genome sequencing of Macrophomina phaseolina Karbala-1 isolated from okra root rot.
- Draft genome sequence of two strains of carotenoid-producing yeast Rhodotorula sp., isolated from a mangrove leaf in Okinawa, Japan.
- Complete genome sequence of Bacillus thuringiensis strain B-T-3 isolated from Qingdao, China, highly toxic against Plutella xylostella (Lepidoptera: Plutellidae).
- Complete genome of Bacillus anthracis strain ter21 from an infected zoo pony in Ternopil, Ukraine, 2021.
- Long-term molecular embedding of early life adversity: leukocyte DNA methylation and gene expression associations from childhood to young adulthood.
- Epigenetic Markers of Cell Division and Ageing in Relation to Breast Cancer Survival.
- Antibody-trapping presents a widespread pitfall for microscopy and genomics in the nucleus.
Immunology
- Precision targeting of CLDN18.2: A new therapeutic paradigm for gastric cancer.
- New biomarkers for antibody-drug conjugates in lung cancer the pathologist's perspective.
- A prematurely terminated phase 2, randomised trial to evaluate immunogenicity and reactogenicity of a single versus two-dose primary vaccination regimen of the mRNA vaccine BNT162b2 in previously SARS-CoV-2 infected children 5-11 years old (CoVacc trial).
- Germinal center responses at barrier organ sites.
- Hsa_circ_0003258 drives serine biosynthesis and docetaxel resistance in prostate cancer by enhancing IGF2BP3-mediated PSAT1 mRNA stability.
- Identification of aurodox as a plant immunity inducer against suspension culture cells of Arabidopsis thaliana from Ōmura natural product library.
- Seropositivity Status in Patients with Suspected Measles: Are We Going Back to The Beginning with Measles?
- Autoantibodies against adenosine deaminase acting on RNA1 (ADAR1) in patients with systemic lupus erythematosus: its relationship to clinical features and other autoantibodies.
- Protocol for genomic mapping of chromatin targets using high-throughput CUT&RUN.
- Dynamicity of Topoisomerase 1 binding at super-enhancers regulates TLR-responsive gene expression program in macrophages.
- CD43: Recent Advances and Emerging Functions.
- Preclinical development of SL-325, a novel high-affinity DR3-blocking antibody for durable inhibition of the DR3/TL1A axis in inflammatory bowel disease.
- Insights from adaptive immune regulation for disease resistance breeding in livestock and poultry.
- Factors Associated with Childhood Vaccination in Sub-Saharan African Countries Experiencing Armed Conflicts: A Scoping Review.
- Japanese Encephalitis Vaccine Preferences and Uptake in Western Travelers and Locals: Strategies to Enhance Vaccine Uptake.
Microbiology
- Temporal dynamics of bromoform metabolite formation and microbial responses during in vitro rumen fermentation with Asparagopsis taxiformis.
- The microbiome-epigenome axis: Regulation of host genome function across development and disease.
- Germinal center responses at barrier organ sites.
- A single transcription factor SlYABBY5b synchronizes gibberellin-mediated stature and basal immunity in tomato.
- Identification of aurodox as a plant immunity inducer against suspension culture cells of Arabidopsis thaliana from Ōmura natural product library.
- Seropositivity Status in Patients with Suspected Measles: Are We Going Back to The Beginning with Measles?
- Cyanobacterial flocculation as a defence against bacterial predation.
- Acidifying bacteria inhibit pathogenic bacteria more strongly with increasing glucose.
- Differential Effects of Prenatal Depression and Anxiety on Infant Sleep: Dual-Pathway Mechanisms Involving the HPA Axis and the Gut-Brain Axis.
- Oral Health, Periodontitis, and Respiratory Diseases: Biological Pathways.
- CD43: Recent Advances and Emerging Functions.
- Host plant use by spittlebug nymphs in agroecosystems: a field survey supporting targeted vegetation management.
- Insights from adaptive immune regulation for disease resistance breeding in livestock and poultry.
- Multi-kingdom gut microbiota analyses define bacterial-fungal interplay in multiple type 2 diabetes cohorts.
- Preoperative proton pump inhibitor therapy and its influence on postoperative complications following major liver resection.
Evolutionary Biology
- In Situ N-Doped Carbon Coating on NaTi(2)(PO(4))(3) for Aqueous Hybrid-Ion Batteries Mitigating Hydrogen Evolution Reactions and Material Dissolution.
- Plant hormone manipulation impacts salt spray tolerance, which preempts herbivory as a driver of local adaptation in the yellow monkeyflower, Mimulus guttatus.
- Increased or decreased numbers of CpG dinucleotide motifs in the genome of influenza A virus do not affect in vitro virus phenotype.
- Pyocyanin produced by Pseudomonas aeruginosa creates legacy effects that promote antibiotic resistance evolution in enterococci.
- Cross-Scale Design of Low-Loading Ru-Based Catalysts for the Oxygen Evolution Reaction in Proton Exchange Membrane Water Electrolysis.
- The Evolution of Patient Safety Practices Over the Last Two Decades.
- From Morbidity & Mortality To Textbook Outcomes - The Evolution Of Quality Assessment In Liver Surgery: Perspective From Pakistan.
- China's new quality productive forces in healthcare: spatial disparities, dynamic evolution, and convergence.
- Structural characteristics of the Phoebe hui chloroplast genome and phylogenetic analyses of Phoebe plants.
- Unveiling Coordination Effects for Hydrogen Evolution Reaction Using an Interpretable Machine Learning Model.
- Genome evolution and transposable element expansion reveal host-associated genomic features in Cladosporium cucumerinum.
- An ancient anthozoan protein reveals an alternative evolutionary path of antiviral signalling.
- Stepwise emergence of recombination suppression precedes fissiparous asexuality in the planarian Schmidtea mediterranea.
- Rapid and Continuous Directed Evolution in Vibrio natriegens Utilizing an In Vivo Hypermutation System.
- Comment on: The Metabolic and Bariatric Surgery Accreditation and Quality Improvement Program's role in the evolution of quality in metabolic and bariatric surgery.
Molecular Ecology
- Host plant use by spittlebug nymphs in agroecosystems: a field survey supporting targeted vegetation management.
- Screening optimum reference genes for quantitative real-time polymerase chain reaction analysis in invasive apple snail, Pomacea canaliculata under different conditions.
- DRIVE v3: Command Line Application for Identity-by-Descent Haplotype Clustering in Large Biobank Scale Data.
- Genetic structure of Botrytis cinerea population from tomato in Liaoning province of China.
- Structural characteristics of the Phoebe hui chloroplast genome and phylogenetic analyses of Phoebe plants.
- A global research coordination programme is urgently needed for biodiversity.
- A field-measured dataset of plant and soil characteristics spanning six grassland types in the Zoige, northeastern Tibetan Plateau, China.
- Soil pollution and health risk assessment from potentially harmful elements at various land types in the dust center of West Asia (Sistan, Iran).
- Deconstructing empirical fitness seascapes across scales of granularity.
- Seed disperser connectivity in a heterogeneous landscape of the Colombian Coffee Region.
- A Practical Framework for GT-Seq Panel Optimization.
- Comparison of Environmental DNA and Bulk DNA Metabarcoding for Assessing Terrestrial Arthropod Diversity Across Three Habitat Types on Guam.
- Which, when, and where traits matter: functional trait-mediated species associations shift with microenvironmental and climatic variation.
- Soil eDNA Biomonitoring: Assessing Efficacy for Detecting Terrestrial Vertebrate and Plant Biodiversity.
- The First Functional Traits Dataset for the Endemic Flora of Greece: morphology, ecology and ecosystem services.
arXiv Physics
- PDF Accessing both electrochemical SEIRA and SERS with ultrasensitive metamaterials for enhanced molecular identification
- PDF 3D Imaging of Complex Skyrmion and Hopf Topologies in an Extended Sample
- PDF Unpinning of trapped oil droplets via non-resonant acoustic streaming in capillary tubes
- PDF Weak-Flow Induced Dielectric Axes Rotation in Dipolar Suspensions
- PDF Sparse Sensor Placement for Reducing Forecast Errors in Ensemble Kalman Filtering
- PDF Ion firehose and ion cyclotron instability with subtracted-Kappa distributions
- PDF Quantum computer architecture with ions in tweezer arrays
- PDF Modular molecular toolkit for photochemical energy conversion in a self-assembling nanocontainer
- PDF A hardware-safety-gated system for LLM-written native ARTIQ control code on a trapped-ion platform
- PDF Plasmonic coated scatterers for tunable coherent perfect absorption
- PDF Organic Semiconductor Alignment via Confinement in Vapor-Guided Droplets
- PDF Real Quantum Chemistry With Complex Orbitals
- PDF On the Effects of Decentralized Moderation on Network Robustness and Information Diffusion in Mastodon
- PDF Unraveling Internal Friction in a Coarse-Grained Protein Model
- PDF Kolmogorov Arnold networks (KAN) for aerodynamic prediction: a comparison with MLPs and GNNs
arXiv Mathematics
- PDF $\mathrm{W}^*$-algebraic Integration Theory
- PDF The Effect of Topological Defects and Magnetic Flux on Fully-Heavy Tetraquarks and Mass Spectra of Heavy Quarkonia Using the Analytical Exact Iteration Method
- PDF Hall Geometry and Auslander-Reiten Quiver
- PDF Typical distances in high-genus triangulations
- PDF Error-Conditioned Neural Solvers
- PDF Congruent copies of finite patterns in planar point sets
- PDF All you need is log
- PDF Coquasi-bialgebroids and cocycle twisting
- PDF On the deformation theory of chiral quantizations
- PDF Godbillon-Vey classes of Lie subalgebroids
- PDF Exact subsystem dynamics in the deterministic Floquet-PXP model
- PDF Classification of homogeneous almost complex $4$-manifolds with non-degenerate torsion bundle
- PDF Valuing American options and Flexible Forwards contracts in time-dependent models
- PDF A Precompactness theorem for Einstein metrics on homogeneous torus bundles
- PDF On the homology groups of clique complexes of strongly regular graphs
arXiv Computer Science
- PDF DanceOPD: On-Policy Generative Field Distillation
- PDF Ask, Solve, Generate: Self-Evolving Unified Multimodal Understanding and Generation via Self-Consistency Rewards
- PDF Scalable Behavior Cloning with Open Data, Training, and Evaluation
- PDF World Action Models Enable Continual Imitation Learning with Recurrent Generative Replays
- PDF Paying More Attention to Visual Tokens in Self-Evolving Large Multimodal Models
- PDF DnA: Denoising Attention for Visual Tasks
- PDF Don't Settle at the Mode! Mitigating Diversity Collapse in Pretrained Flow Models via Feature Self-Guidance
- PDF Reinforcement Learning without Ground-Truth Solutions can Improve LLMs
- PDF PhysiFormer: Learning to Simulate Mechanics in World Space
- PDF Autoregressive Boltzmann Generators
- PDF When are likely answers right? On Sequence Probability and Correctness in LLMs
- PDF RouterVLA: Turning Smoke Tests into Supervision for Heterogeneous VLA Selection
- PDF Error-Conditioned Neural Solvers
- PDF Continual Robot Policy Learning via Variational Neural Dynamics
- PDF CHIA: An open-source framework for principled, agentic AI-driven hardware/software co-design research
arXiv Quantitative Biology
- PDF Deep learning model emulators for marine biogeochemistry forecasting from days to decades
- PDF Hyperiax and Phylogenetic Inference from Shape Data
- PDF The parental parsimony problem on binary, tree-child phylogenetic networks
- PDF Surviving by Serving: Functional Relevance Drives Self-Organization in Complex Adaptive Systems
- PDF State-Specific Respiratory Signatures for Affective and Stress Recognition: Interpretable Respiratory Markers, Autocorrelation Lags, and Compact CNN Models
- PDF On-farm management strategies for reducing H5N1 transmission in dairy cattle
- PDF Semialgebraic Conditions for Identifying Triangles in Phylogenetic Networks
- PDF pVACtools v6: A comprehensive suite for neoantigen prediction, visualization, and therapy design
- PDF Budget-Constrained Compound Library Prioritization with Risk Awareness and Uncertainty Quantification
- PDF Shape-Constrained Bayesian Active Learning of Self-Limiting Saturation Curves
- PDF scBench-Long: Verifiable Benchmarking of Long-Horizon Single-Cell Biology
- PDF GRAINS: Storage-Aware Algorithm-Architecture Co-Design Enabling High-Performance and Low-Cost Graph-Based Genome Analysis
- PDF Closing the Loop to Discover Psychological Theories with an Automated Cognitive Scientist
- PDF Frustrated shapes of solid domains in fluid membrane vesicles: From rolls and folds to crumples and wrinkles
- PDF Smoothly Time-Varying Continuous Time Markov Chains in Phylogenetics
arXiv Quantitative Finance
- PDF Valuing American options and Flexible Forwards contracts in time-dependent models
- PDF Endogenous Reinsurance Pricing in Large Competitive Insurance Markets: Finite-Player and Mean Field Analysis
- PDF Pretrained Time-Series Foundation Models for Financial Return Forecasting
- PDF Conditional Leibniz Derivative Estimation with an Application to American Call Min-Options
- PDF A sharp order-three obstruction to the aggregation of conditional price-of-risk attribution
- PDF Data-Driven Duration Management -- Term Structure Forecasting Using Machine Learning
- PDF Robust Hedging Valuation Adjustment under Liquidity--Demand Stress
- PDF Portfolio Optimization for Commodity ETFs under Heavy-Tailed Returns
- PDF Geometrically convex return risk measures on AM-algebras
- PDF Matrix Approximation of Bachelier Option Prices and Greeks under Stochastic Volatility models
- PDF The Inference-Compute Frontier and a Latency-Efficient Architecture for Limit Order Book Prediction
- PDF Hierarchical Graph Learning for Calendar Spread Strategies in Commodity Futures Markets
- PDF A Two-Stage Decision Support System for Sustainability-Aware Long Short Portfolio Optimization
- PDF Time-dependent weighted directed networks of cryptocurrency interaction from high-frequency returns
- PDF Equilibrium singular dividend control under ambiguity aggregation of heterogeneous discount rates