Protein Data Bank
- 3D 10ME: SemiClosed Eco-ePEC: Cryo-EM structure of Eco RNAP his-elemental paused elongation complex with a semi-closed active site (closed TL and SI3, open ...
- 3D 10MF: CBR9379 bound Open1 Eco-ePEC: Cryo-EM structure of Eco RNAP his-elemental paused elongation complex with an open active site (open TL, SI3 and RH-FL)
- 3D 10MG: CBR9379 bound Open2 Eco-ePEC: Cryo-EM structure of Eco RNAP his-elemental paused elongation complex with an open active site (open TL, SI3 and RH-FL)
- 3D 10MI: Closed Mtb-EC: Cryo-EM structure of Mtb RNAP elongation complex (substrate loading mimic) with a closed active site (closed TL and RH-FL)
- 3D 10MJ: Open Mtb-EC: Cryo-EM structure of Mtb RNAP elongation complex (substrate loading mimic) with an open active site (open TL and RH-FL)
- 3D 10MK: SemiClosed Mtb-EC: Cryo-EM structure of Mtb RNAP elongation complex (substrate loading mimic) with a semiclosed active site (closed TL, open RH-FL)
- 3D 10ML: AAP-SO2 bound Open Mtb-EC: Cryo-EM structure of Mtb RNAP elongation complex (substrate loading mimic) with an open active site (open TL and RH-FL)
- 3D 11FW: Cryo-EM structure of the bacteriophage N4 virion RNA polymerase (open plug state)
- 3D 11GO: Cryo-EM structure of the bacteriophage N4 virion RNA polymerase (transcription initiation complex)
- 3D 11GP: Cryo-EM structure of the bacteriophage N4 virion RNA polymerase (closed plug state)
PDB Nitrogen Cycle
- 3D 21LA: Olep, Cytochrome P450 epoxidase involved in the biosynthesis of murideoxycholic acid (MDCA)
- 3D 24XI: Crystal structure of the diaminopimelate dehydrogenase from Pyrococcus sp. in its holo form
- 3D 27LJ: the structure of cis-isoeugenol synthase AtaIGS1 mutant
- 3D 29VD: Crystal structure of the human METTL3-METTL14 in complex with STC-15
- 3D 29VJ: Crystal structure of the human METTL3-METTL14 in complex with STM-2457
- 3D 30EW: XN-IL lectin from Xenorhabdus nematophila in complex with lactose
- 3D 31CJ: Reduced E.coli aerotaxis receptor
- 3D 31CK: Oxidized E.coli aerotaxis receptor in MH-cap free state
- 3D 36IQ: Structure of de novo designed doxorubicin binding protein with doxorubicin bound
- 3D 9OSA: Crystal Strucutre of SwnH1
PDB Photosynthesis
- 3D 27LJ: the structure of cis-isoeugenol synthase AtaIGS1 mutant
- 3D 31CJ: Reduced E.coli aerotaxis receptor
- 3D 31CK: Oxidized E.coli aerotaxis receptor in MH-cap free state
- 3D 9MNC: Human 80S ribosome bound to small molecule SW393071
- 3D 9RKM: Crystal structure of [FeFe]-hydrogenase CbA5H from Clostridium beijerinckii in Hinact state
- 3D 9SDD: Crystal structure of ERb-ERc heterodimer from Schizochytrium sp.
- 3D 9SRP: Structure of the Diels-Alderase ChlE3 in complex with cofactor FAD
- 3D 9TN7: F420-nitrite reductase from Methanocaldococcus infernus at 1.58 A resolution
- 3D 9YGM: Babesia divergens ribosome structure by single-particle cryo-EM (3D class3, E-site tRNA)
- 3D 9YXB: Babesia divergens ribosome structure by single-particle cryo-EM (3D class1, A-, P-, and E-site tRNAs and mRNA)
PDB PFAS Degradation
- 3D 9HLN: Crystal structure of MnmA D100C mutant from Streptococcus pneumoniae with [4Fe-4S] cluster in complex with formate
- 3D 9RFP: Peptidedeformylase XisD in complex with formiate
- 3D 9Q1E: Cryo-EM Structure of the MgtA Tetramer at 2.7 A Resolution
- 3D 9Q6O: Cryo-EM Structure of MgtA in the E2-P State at 2.7 A Resolution
- 3D 9VBQ: Crystal structure of FXR in complex with agonist XJ02862-S2
- 3D 9VBR: Farnesoid X Receptor Agonists_FXR fused with a HD3 peptide
- 3D 9ZLK: Cryo-EM structure of MgtA with bound AMPPCP and magnesium
- 3D 24UU: Crystal structure of Endonuclease IV from Chlamydophila pneumoniae
- 3D 9Z11: Crystal Structure of the Poly(Hexamethylene Adipamide) (Nylon66) Hydrolase Nyl50 in Complex with Butyrate at Room Temperature
- 3D 24HR: Human KRAS G12D (GDP-bound) in complex with macrocyclic peptide inhibitor AP6252
Project Gutenberg
- Grimms' Fairy Tales EPUB PDF
- The Complete Works of Shakespeare EPUB PDF
- Bleak House EPUB PDF
- The Souls of Black Folk EPUB PDF
- Metamorphosis EPUB PDF
- Moby Dick EPUB PDF
- Peter Pan EPUB PDF
- The Fall of the House of Usher EPUB PDF
- Adventures of Huckleberry Finn EPUB PDF
- The Bible, Douay-Rheims Version EPUB PDF
- The Republic EPUB PDF
- Persuasion EPUB PDF
- The Iliad EPUB PDF
- Macbeth EPUB PDF
- Leviathan EPUB PDF
GitHub bioRxiv
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Aperivue/medsci-skills
162
Python
Claude Code skills for medical research — literature search, reporting guideline...
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systematicmedicine/SomaticCODEC
5
Python
A CODEC-based assay and open-source pipeline for quantifying somatic mutation bu...
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JohnLazzari/motor_compositionality
5
Python
Exploring multi-tasking RNNs trained to perform movements with biomechanical fee...
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jmschrei/ledidi
107
Python
Ledidi turns any machine learning model into a biological sequence editor, allow...
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brain-score/vision
186
Python
A framework for evaluating models on their alignment to brain and behavioral mea...
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EMOD-Hub/EMOD
106
C
Source files for building the IDM EMOD disease transmission model.
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anthropics/knowledge-work-plugins
21840
Python
Open source repository of plugins primarily intended for knowledge workers to us...
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MortadhaMannai/MortadhaMannai
5
Unknown
Driven by an unwavering fascination for AI's transformative power, I'm captivate...
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grobidOrg/grobid
4954
Java
A machine learning software for extracting information from scholarly documents
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beantkapoor786/RAPID
6
R
RAPID - R based Amplicon Pipeline for Interactive DADA2 - A unified Shiny applic...
Synthetic Biology
- Discovery and Biosynthesis of Nitrilobacillins by Post-Translational Introduction of C-Terminal Nitrile Groups.
- AP2/ERF Transcription Factors StRAP2.7a/b Modulate trans-Zeatin Biosynthesis and StSP6A Expression to Facilitate Stolon and Tuber Formation in Potato.
- Immunometabolic mechanisms of ionizing radiation in a mouse model of gastrointestinal acute radiation syndrome.
- Cross Kingdom Metabolic Engineering Paradigm Elevating Sustainable Protein Production.
- Diacylglycerol kinase ζ in B lymphocytes supports CD40-mediated immune synapse formation, mTORC1 signaling, and plasma cell fate.
- Bacteriophage-mediated cell lysis externalizes a metabolically valuable nutrient to broadly modulate bacterial communities.
- Pathogenic Rewiring of IL6 Signaling Fuels Macrophage Immunometabolic reprogramming in COPD.
- Mechanism of auranofin toxicity: Inhibition of tetrahydrobiopterin metabolism.
- Comparative genome analysis and secondary biosynthetic potential of the Streptomyces microflavus strains isolated from high altitude.
- Knockout of OsRbohD (the NADPH Oxidase Gene) Enhances Saline-Alkaline Stress Tolerance and Grain Yield in Rice by Reducing ROS Accumulation.
- PYCR1 modulates ferroptosis and malignant phenotypes of clear cell renal cell carcinoma through proline biosynthesis.
- Enzyme Assemblies in Nucleotide Metabolism: Structure, Regulation, and Disease Implications.
- Environmental remediation using silver nanoparticles biosynthesized from agro waste banana and pineapple peels.
- Chitinase 38 confers cadmium tolerance via reduced cadmium uptake and metabolic reprogramming in barley.
- Tangled Tail of Mechanically Interlocked Peptides.
Biotechnology
- An Entropy-Driven Autocatalysis-Regulated Signal-On CRISPR/Cas12a Biosensor Supported by DNA Triangular Prism Scaffold.
- Thermo-Responsive Living Microspheroids Enable a Regenerative Living Disk-Drive System for DNA Data Storage.
- New Modalities and Carcinogenicity Assessment.
- Response to "Defining durability in SCD gene therapy".
- A Humanized Knock-in Mouse Model of the PSEN1 V97L Mutation from a Major Chinese Alzheimer's Disease Pedigree Reveals Early Neuroinflammation.
- Knockout of OsRbohD (the NADPH Oxidase Gene) Enhances Saline-Alkaline Stress Tolerance and Grain Yield in Rice by Reducing ROS Accumulation.
- Therapeutic strategies to enhance proliferation in diabetic wound contraction: a comprehensive review from 1991-2025.
- CRISPR/Cas9 Mediated Genome Editing for Enhancing Abiotic Stress Tolerance in Rice: An Omics Guided Perspective.
- Generation of transgenic pigs with targeted insertion of a wildtype copy of human PKD2 gene.
- Intraflagellar transport protein IFT172 contains a C-terminal ubiquitin-binding U-box-like domain involved in ciliary signaling.
- Patient-specific midbrain organoids with CRISPR correction recapitulate neuronopathic Gaucher disease phenotypes and enable evaluation of novel therapies.
- Characterization and Bioactivity of Nanovesicles Recovered From Industrial Cheesemaking Whey Wastewater.
- Beyond DNA editing: how Cas13 redefined programmable RNA manipulation and what still limits its therapeutic promise.
- Hyperthermia-Enhanced Adeno-Associated Virus Gene Therapy: Mechanisms, Delivery Technologies, and Translational Potential.
- SNIPSNP: precision design of CRISPR/Cas9 knock-in reagents for variant correction and disease modeling.
AI & Machine Learning
- Diagnostic accuracy of artificial intelligence models for seizure outcome prediction after epilepsy surgery: A systematic review and meta-analysis.
- Enhancing spectral interpretability and band selection prior to prediction model development via CAKE.
- Artificial intelligence-assisted microsphere immunoassay for ultrasensitive Salmonella detection through microfluidic translocation event counting.
- Machine learning model based on spontaneous brain activity and functional connectivity for identifying patients with internet gaming disorder.
- A fully inductive inference protocol for population GNNs in single-subject brain disorder diagnosis.
- Sequence-structure cross-attention model integrating ESM-2 embeddings and AlphaFold cues for accurate prediction of Escherichia coli protein solubility.
- Exploring the Lived Experience of Acne in the United States and the United Kingdom: Social Media Analysis.
- Noninvasive Electrophysiological Biomarkers of Olfactory Responses Across Cognitive States in Alzheimer Dementia: Cross-Sectional Study.
- Computational Insights Into Smart Bioelectronics in Digital Health Care (2020-2024): Topic Modeling Study.
- A Novel Framework for Gene Regulatory Network Inference Integrating Bidirectional Mamba and Dual Contrastive Learning.
- Artificial intelligence-integrated nanotherapeutics for rare Peutz-Jeghers syndrome hamartoma-induced obstructions: latest clearance strategies.
- Behavioral, neural and neurochemical basis of effort-related decision making.
- From microscope to artificial intelligence: potential and perils in bone marrow evaluation.
- Scalar machine learning of tensorial quantities-Born effective charges from monopole models.
- Machine Learning-Guided Tailored Synthesis of Single Room-Temperature Phosphorescent Carbon Dots.
Neuroscience
- Fatal pediatric collapse with bilateral subdural hematoma and retinal hemorrhage occurring in a public park: a forensic case study.
- Machine learning model based on spontaneous brain activity and functional connectivity for identifying patients with internet gaming disorder.
- A fully inductive inference protocol for population GNNs in single-subject brain disorder diagnosis.
- Computational Insights Into Smart Bioelectronics in Digital Health Care (2020-2024): Topic Modeling Study.
- Immunity Gone Viral: Subacute Cognitive Decline With Multifocal Brain Lesions in Neuromyelitis Optica Spectrum Disorder.
- Routine Preoperative Cognitive Assessment to Improve Brain Health in Older Surgical Patients: Insights From an Anesthesia Patient Safety Foundation Survey.
- Beyond Velopharyngeal Dysfunction: A Comprehensive Review of Pathology Associated With Submucous Cleft Palate.
- TPK1-Related Thiamine Metabolism Dysfunction Syndrome.
- Reevaluating the Effectiveness of Intracranial Pressure Monitoring in Severe Traumatic Brain Injury: Influence of Withdrawal of Life-Sustaining Treatments.
- A High-Efficiency Neural Processing SoC for Adaptive Closed-Loop Neuromodulation.
- Diagnostic reasoning in clinical neurology: a comprehensive primer.
- Dissecting causal and putative mechanistic pathways from lifestyle factors to neurological diseases via the glymphatic system: a Mendelian randomization study.
- Sleep deprivation increases levels of the synaptic density marker SV2A in the human brain.
- Viloxazine occupies the 5-HT2C receptor in the macaca fascicularis brain in vivo: A [11C]CIMBI-36 positron emission tomography study.
- Haemophilus influenzae serotype a as a cause of purulent meningitis in a six-month-old infant.
Climate Science
- China's carbon emissions trading system (ETS) helps the country slow down industrial solid waste accumulation.
- Cultivation enhances warming sensitivity of redox-driven carbon pulses in black soils: The overlooked role of anaerobic legacy effects.
- Unique fingerprint of marine ectotherm body size change during hyperthermal crises.
- Genomic vulnerability to climate change of a poorly dispersing and threatened fish, the southern pygmy perch (Nannoperca australis).
- Future climate scenarios reshape the suitability of major malaria vector taxa in South America.
- Machine and deep learning for sentinel-based land use and land cover change detection: a systematic review and future outlook.
- CRISPR/Cas9 Mediated Genome Editing for Enhancing Abiotic Stress Tolerance in Rice: An Omics Guided Perspective.
- The Impact of Climate Change on the Climatic Suitability of Rhipicephalus microplus in Mainland China.
- Antigenic Multi-Epitope Vaccine Against Ross River Virus Using Capsid and Envelope Proteins via Immunoinformatics and Reverse Vaccinology Approaches.
- Climate change and emerging diseases: challenges for physicians in Canada.
- Emerging Trends and Research Frontiers in Climate Change and Asthma: Insights From a Two-Decade Bibliometric Analysis.
- Challenges of scale in assessing the risks of climate change for heritage.
- Comparison of Palythoa tuberculosa-dominated and hard coral-dominated benthic communities in Okinawa, Japan.
- Parasites of Arctic char (Salvelinus alpinus) in North America: a systematic literature review and an analysis of contemporary data from anadromous populations from Nunavut.
- Elevational constraints and climatic buffering: comparison of Pierinae and Coliadinae across Taiwan Island and mainland China.
Medicine
- Bacoside-A from Bacopa monnieri (L.) Wettst. in Parkinson's disease: In Silico and preclinical insights into dopaminergic neuroprotection.
- Luteolin attenuates vascular-renal dysfunction and fibrosis in hypertensive rats by targeting oxidative stress, inflammation, and fibrotic pathways.
- Developing a patient decision aid for Femoroacetabular Impingement Syndrome: A mixed-methods study.
- Effect of a digital mindfulness intervention for mild-to-moderate late-life depression: A randomized controlled trial.
- Noninvasive Electrophysiological Biomarkers of Olfactory Responses Across Cognitive States in Alzheimer Dementia: Cross-Sectional Study.
- Association between post-treatment neuroimaging markers of cerebral small vessel disease and short-term efficacy of recombinant tissue plasminogen activator in acute stroke patients.
- Computational Insights Into Smart Bioelectronics in Digital Health Care (2020-2024): Topic Modeling Study.
- Discovery of New Butyrylcholinesterase Inhibitors and Evaluation of Their Biological Activity against Alzheimer's Disease.
- Radio-Protective Effects of Selenium Nanoparticles Synthesized Using Aqueous Extract of Rhodiola on Mice Irradiated by (60)Co γ-Rays.
- Immunometabolic mechanisms of ionizing radiation in a mouse model of gastrointestinal acute radiation syndrome.
- Immuno-Proteomic Features Associated to Relapse Risk in Myelin Oligodendrocyte Glycoprotein Antibody-Associated Disease.
- Addressing Biases in Analysis of Time of Infusion: NCI/SWOG Trial S1404 Among Participants With High-Risk Resectable Melanoma Who Received Adjuvant Anti-PD-1 Therapy.
- 'Presence of alarm symptoms at coeliac disease diagnosis is not associated with poorer long-term treatment outcomes' [Letter].
- Bridging the Gap: Examining the Association of Travel Burden With Treatment Administration and Survival in Stage II/III Gastric Cancer.
- Operative Treatment Versus Spica Casting for Treatment of Pediatric Femoral Shaft Fractures in Children Aged 4 to 6 Years: A Large Multi-Institutional Age-Stratified Comparative Analysis.
Genomics
- Effects of salt stress on seedling growth and anthocyanin synthesis in black goji (Lycium ruthenicum Murray).
- Immunometabolic mechanisms of ionizing radiation in a mouse model of gastrointestinal acute radiation syndrome.
- Single-cell transcriptomics identifies ergothioneine as a mitochondrial protector to prevent AKI-to-CKD progression.
- Genomic vulnerability to climate change of a poorly dispersing and threatened fish, the southern pygmy perch (Nannoperca australis).
- Multi-omics biomarkers of endothelial dysregulation preceding chronic lung allograft dysfunction: A prospective cohort study.
- Pathogenic Rewiring of IL6 Signaling Fuels Macrophage Immunometabolic reprogramming in COPD.
- Genome-resolved analysis of multidrug-resistant ESKAPE pathogens reveals Klebsiella pneumoniae diversity and plasmid-mediated resistance in a patient in intensive care.
- Integrated transcriptomic and metabolomic analysis reveals the regulatory networks in response to heat stress in Pleurotus pulmonarius.
- Genomic surveillance of SARS-CoV-2: a resource-efficient wastewater-based workflow.
- Telomere biology and telomerase regulation across species: evolutionary insights into aging, longevity, and genome stability.
- Multi-omics reveal molecular changes during suspension adaptation of HEK293 cells.
- Genetic-epigenetic interactions (meQTLs) in orofacial clefts etiology.
- CRISPR/Cas9 Mediated Genome Editing for Enhancing Abiotic Stress Tolerance in Rice: An Omics Guided Perspective.
- Generation of transgenic pigs with targeted insertion of a wildtype copy of human PKD2 gene.
- Network-Based Multiomics Integration Reveals Immunometabolic Convergence Between COVID-19 and Pulmonary Arterial Hypertension.
Immunology
- Artificial intelligence-assisted microsphere immunoassay for ultrasensitive Salmonella detection through microfluidic translocation event counting.
- Narrative shielding and pre-bunking: a synergistic strategy against vaccine hesitancy in pediatrics.
- Isolated Peripheral Nervous System Presentation in Ma/Ma2-Associated Autoimmunity.
- Immunity Gone Viral: Subacute Cognitive Decline With Multifocal Brain Lesions in Neuromyelitis Optica Spectrum Disorder.
- Immuno-Proteomic Features Associated to Relapse Risk in Myelin Oligodendrocyte Glycoprotein Antibody-Associated Disease.
- Intracellular delivery of full-length antibodies via organ-targeted lipid nanoparticles.
- Merkel cell polyomavirus exploits extracellular vesicles for skin infection and host immune evasion through activated Wnt signaling.
- The dual role of leukotrienes in the tumor microenvironment: balancing pro-tumorigenic and anti-tumor immunity.
- Impact of behavioral insights-informed social media campaigns on HPV vaccination in Bangladesh.
- Mepolizumab add-on after relapse during rituximab maintenance in MPO-ANCA-positive eosinophilic granulomatosis with polyangiitis: a case report and literature review.
- Critical ischemia of multiple organ systems in a patient with systemic lupus erythematosus complicated by catastrophic antiphospholipid syndrome: potential pathogenetic role of non-inhibitory anti-ADAMTS13 autoantibodies.
- Organ-Limited ANCA-Associated Orbital Inflammatory Disease: A Diagnostic Challenge.
- Predictors of rapidly progressive interstitial lung disease in anti-MDA5 dermatomyositis: a meta-analysis.
- Current outlook on the use of biological agents to improve outcomes in adult secondary hemophagocytic lymphohistiocytosis.
- De novo pyrimidine synthesis controls germinal center B cell and plasma cell fates and systemic autoimmunity.
Microbiology
- Artificial intelligence-assisted microsphere immunoassay for ultrasensitive Salmonella detection through microfluidic translocation event counting.
- Fermented foods: lessons learned from metagenomics.
- Immune Response and Gut Microbiota Shift in the Red Palm Weevil (Rhynchophorus ferrugineus) Infected With Entomopathogenic Fungus, Beauveria bassiana, Reveal Host-Pathogen Interactions.
- Macrophages Intracellularly Gelated With Bioactive Hydrogels for Synergistic Neutralization, Eradication, and Osteopromotion in Periodontitis Treatment.
- Fasting primes small intestinal regeneration after damage via a microbiome-metabolite-chromatin axis.
- Counterselection against β-lactamase-expressing bacteria via an activatable photosensitizer that accumulates in resistant pathogens.
- Do probiotics modulate dietary intake? Pilot data from a randomized controlled sub-study of the ProBioHRV clinical trial in patients with depression and healthy controls.
- Eliminate pneumococcal colonization by targeting intracellular acidification that promotes H2O2 production to enhance bacterial survival.
- Contamination of Hospital Inanimate Surfaces with Methicillin-Resistant Staphylococcus aureus and Extended-Spectrum Beta-Lactamase producing bacteria at Ocean Road Cancer Institute, Dar es Salaam, Tanzania.
- MetagenomicKG: a knowledge graph for metagenomic applications.
- Germinate-to-Exterminate: Pre-Crop Stimulation of Verticillium dahliae Microsclerotia Germination by Root Exudates as a Novel Strategy for Sustainable Control of Verticillium Wilt.
- Population Structure of Aspergillus flavus in Hazelnuts from Azerbaijan: Genetic Diversity, Clonality and Biocontrol Implications.
- IGS1 Haplotype Genotyping Enables Efficient Dissection of Population Diversity of the Wheat Stripe Rust Fungus (Puccinia striiformis f. sp. tritici).
- Haemophilus influenzae serotype a as a cause of purulent meningitis in a six-month-old infant.
- Microbiotas from extremely preterm infants with growth faltering impair postnatal growth and metabolism in mice.
Evolutionary Biology
- Stabilization of Ligand-Free Small Gold Nanocluster Within a Metal-Organic Framework for Enhanced Hydrogen Evolution and Horseradish Peroxidase-Mimicking Catalysis in Aqueous Media.
- Enhanced Secondary Organic Aerosol Formation in Humid Urban Air: The Evolution of Oxygenated Volatile Intermediates.
- Unravelling the Formation and Evolution Mechanism of Solid Electrolyte Interphase Toward Stable and Rapid Sodium Storage.
- Spontaneous Symmetry Breaking via Metal-Triggered Surface Defect Engineering for Durable Piezocatalytic Hydrogen Evolution.
- Temporal Evolution of Sternal Healing on Chest CT Following Median Sternotomy: A Retrospective Analysis of Patterns of Fat Stranding, Lymphadenopathy, and Callus Formation.
- Metal-Dependent Formation of Heteropoly Blue Anions in Keggin Polyoxometalate Catalysts for Enhanced H(2) Evolution with Iron(II)- and Cobalt(II)-Containing Counterions.
- Promoting Zinc Plating and Silencing the Hydrogen Evolution Reaction through Spatial Decoupling for Durable Aqueous Zinc-Ion Batteries.
- Functional Interface Modifier with Visualizations of Dendrite Growth and Heat Evolution in Lithium Metal Batteries.
- Can Pareto Optimality Be Evidence of Life?
- Infrequent 3-D Iodocuprate Decorated and Templated by a 1-D Eu Coordination Polymer for the Hydrogen Evolution Reaction.
- The evolutionary ecology of reproduction in the red alga Palmaria palmata: Insights from an atypical life cycle.
- 800 million years of co-evolution in the green plant lineage - the case of LEUNIG and SEUSS transcriptional co-regulators.
- Complete organellar genomes of Cystophora brownii: Insights into mitochondrial and plastid structure and evolution in brown algae.
- Robotic Workstations in Microextraction Techniques: Technological Evolution and Analytical Impact.
- Fetal Brain Abnormalities Following Laser Surgery for Twin-to-Twin Transfusion Syndrome: Imaging Patterns and Evolution.
Molecular Ecology
- Genomic vulnerability to climate change of a poorly dispersing and threatened fish, the southern pygmy perch (Nannoperca australis).
- The Andean-Amazonian and Mesoamerican Bioeconomy: A new paradigm for productivity and well-being.
- Education outside the classroom in Germany: An interdisciplinary multi-methods Study Protocol.
- Integrated Genome-Based and In Vivo Safety Evaluation of Lactiplantibacillus plantarum M2, an Isolate Obtained from the Amazonian Fruit Humiria balsamifera.
- Cerrado plant traits (CPT): a database of functional traits across vegetation types in a global biodiversity hotspot.
- Comparative Analysis of Stress Adaptation in the Yeast Microbiome of Cactus.
- pr2-Wormifier: A Bioinformatics Pipeline to Create Custom Reference Databases for Improved Metabarcoding of Marine Protists.
- Annotated checklist of the butterflies (Lepidoptera: Papilionoidea) of Burkina Faso, West Africa-synthesis and new occurrences.
- A case-based course teaching integrative taxonomy delimits three new ant species in the Pheidole sexspinosa complex (Hymenoptera, Formicidae) from Vanuatu.
- Parasites of Arctic char (Salvelinus alpinus) in North America: a systematic literature review and an analysis of contemporary data from anadromous populations from Nunavut.
- Ecological monitoring of rangeland degradation in Central Asia using remote sensing and field observations: a systematic review.
- Derivation of elephant induced pluripotent stem cells.
- Effects of roadside habitat management on epigeic arthropod diversity: a case study from the Nitra-Selenec expressway junction.
- From individuals to networks: The role of variation in plant-pollinator communities' responses to global change.
- Digital twins as a tool for ecosystem research.
arXiv Physics
- PDF The Dataset Friction Framework: measuring user-facing friction as a complement to FAIR
- PDF Multi-scale reconstruction of single-ion damage tracks in diamond via nitrogen-vacancy centers
- PDF Thermodynamic inference from noisy single-molecule time series
- PDF One country, multiple portraits: representativeness in GPS-based mobility data is source-specific and spatially dependent
- PDF Data analysis methods for powder x-ray diffraction intensity under laser-driven dynamic compression at Omega and NIF laser facilities
- PDF Electrochemical DNA Hairpin Sensors for Differentiating Small Molecule Intercalation from Minor Groove Binding
- PDF Protection Switching in Hybrid Hollow-Core and Single-Mode Fiber Networks: Challenges, Analysis, and Mitigation Strategies
- PDF SuperCond-GNN: Scalable Graph Neural Network Surrogate for Superconducting Circuit Simulations
- PDF HeteroViT: A Versatile Single-Layer Vision Transformer Concept, Co-Designed for Distributed Real-Time Data Reduction on Scientific Detectors
- PDF Structure and information measures of few-electron systems under a spherically symmetric Gaussian potential within a density functional approach
- PDF Direct and Indirect Influence on Likes in Social Media
- PDF A dipolar Bose-Bose mixture of Dysprosium isotopes with controllable interspecies interactions
- PDF Practical Limits of Higher-Order QAM in Hollow-Core Fiber Systems
- PDF Scaling patch analysis of turbulent kinetic energy budget equation in wall-bounded flows
- PDF Hollow-Core Fiber in Direct-Detection Optical Networks: Technology Readiness, Deployment Drivers, and Adoption Outlook
arXiv Mathematics
- PDF Rank Amplification for Shifted Equal Values of Euler's Totient Function
- PDF Open Problem: Is AdamW Effective Under Heavy-Tailed Noise?
- PDF The strong Arnol'd chord conjecture for the boundary of a uniformly convex domain in $\mathbb{R}^{4}$
- PDF Prime-Power Rarefaction and a Density-One Lower Bound for Erdős Problem 400
- PDF A Resolution of Erdős Problem 550 on Tree versus Complete Multipartite Ramsey Numbers
- PDF Robust Structure Learning of $k$-local Lindbladians
- PDF Position-Space Renormalization and Half-Space Truncations in $φ^4_4$
- PDF Optimal Stopping for a Diffusion with Unobserved Bernoulli Drift
- PDF Genuine certification of incompatible quantum instruments through sequential communication tasks
- PDF Which Waveguide Network Realizes a Prescribed Transmission Profile? An Exact Forward Construction
- PDF Muown Implicitly Performs Angular Step-size Decay
- PDF Ergodicity of the bicentralizer flow and Kadison's problem
- PDF Sharp Inequalities for Products of Principal Minors of Positive Definite Matrices
- PDF Recollements of Triangulated Categories and the Singularity Category of a Triangular Matrix Category
- PDF Diffusion Models Adapt to Low-Dimensional Structure Under Flexible Coefficient Choices
arXiv Computer Science
- PDF AutoDex: An Automated Real-World System for Dexterous Grasping Data Collection
- PDF Lift4D: Harmonizing Single-View 3D Estimation for 4D Reconstruction In-the-Wild
- PDF Randomized YaRN Improves Length Generalization for Long-Context Reasoning
- PDF LIBERO-Safety: A Comprehensive Benchmark for Physical and Semantic Safety in Vision-Language-Action Models
- PDF LaST-HD: Learning Latent Physical Reasoning from Scalable Human Data for Robot Manipulation
- PDF Keep The Essentials: Efficient Reference Conditioned Generation via Token Dropping
- PDF CoorDex: Coordinating Body and Hand Priors for Continuous Dexterous Humanoid Loco-Manipulation
- PDF Semantic Browsing: Controllable Diversity for Image Generation
- PDF AIR: Adaptive Interleaved Reasoning with Code in MLLMs
- PDF Open Problem: Is AdamW Effective Under Heavy-Tailed Noise?
- PDF IMAGIN-4D: Image-Guided Controllable Interaction Generation
- PDF PsyBridge: A Hybrid Intelligent Framework for Multi-Dimensional Mental Health Assessment and Decision Support
- PDF Teaching LLMs String Matching, Backtracking, and Error Recovery to Deduce Bases and Truth Tables for the Combinatorially Exploding Bit Manipulation Puzzles
- PDF Can LLMs Reliably Self-Report Adversarial Prefills, and How?
- PDF Tapered Language Models
arXiv Quantitative Biology
- PDF Electrochemical DNA Hairpin Sensors for Differentiating Small Molecule Intercalation from Minor Groove Binding
- PDF From Lab to Landscape: Assessing the Impact of Pesticides on Pollinator Populations Based on Laboratory Data by Combining ALMaSS and BufferGUTS
- PDF The adaptive nature of confirmation bias
- PDF Reduced-Alphabet QUBO/Ising Formulation for Constraint-Driven Cyclic Peptide Sequence Design
- PDF Predator-associated cues promote host riding, and coupling to mobile hosts improves survival in an epizoic limpet
- PDF Bayesian modelling of herd-level infection dynamics in cattle: Local spread as the primary driver of Salmonella Dublin persistence on Öland
- PDF A Matter of Time: Towards a General Theory of Agency
- PDF Circadian output network can buffer period variability
- PDF Estimating common synaptic inputs to spinal motor neurons from motor unit spike trains using openhdemg
- PDF When do correlations reflect biological similarity in ecological dynamics?
- PDF Retrieval-Augmented Multimodal Learning for Enzyme-Substrate Interaction Prediction Under Low-Homology Shift
- PDF SPIDER -- Stitched Power-spectra for Inferring Directed information flow from incomplete and asynchronous Experimental Recordings
- PDF Architecture for Health Initiative (Arch4Health): Computational Challenges in Health-Related Applications and the Role of Computer Architecture in Addressing Them
- PDF Upstream reciprocity versus downstream reciprocity: Catalyzing cooperation
- PDF quaint: An R Package for detecting introgression across a phylogeny using discordant gene tree topologies
arXiv Quantitative Finance
- PDF Anatomy of the Market: A Body-Tail Test of Factor Models
- PDF Analytic Pricing of Bermudan Swaptions with Few Exercise Dates
- PDF Continuous Hidden Markov Models for Equity Returns: Heavy-Tail Emission Families and Regime-Conditional Value-at-Risk
- PDF Asymmetry PRISM: A CPU/GPU Portfolio Optimization Engine for Deadline-Bounded Institutional Rebalancing
- PDF When Staking Rewards Compound: Measuring the Impact of Ethereum's Pectra Upgrade
- PDF Financial Frequency Combs
- PDF Path-dependent Affine Processes
- PDF Mitigating Adverse Selection in Concentrated Liquidity AMMs with Dynamic Fees: An Agent-Based Model Approach
- PDF IPO Finance Agent: Evaluation of LLM Financial Analysts beyond Finance Agent v2, with Automated Rubric Generation -- the Case of the SpaceX (SPCX) IPO
- PDF Pareto Optimal Centralized Risk Sharing with Multiple Agents: Inclusivity and Fairness
- PDF Universal Value-at-Risk superadditivity
- PDF Enhancing the Black-Scholes Model for Option Valuation via Lévy Processes and Malliavin Calculus
- PDF Endogenous Randomness from Adversarial Market Learning
- PDF Leakage-Aware Benchmarking of LLM Forecasting: Real-Time Nowcasts as the Decision-Time Input for Macro Factor Ranking
- PDF Stochastic Volatility in Mean Models with Heavy Tails: A Fast Approximate Bayesian Inference Using Hidden Markov Models