Protein Data Bank
- 3D 10AH: Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 N530D mutant complexed with trans-BAS-2
- 3D 10AI: Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 N530D mutant complexed with cis-BAS-2
- 3D 10BR: Crystal structure of B. burgdorferi HtrA PDZ1-2 domains
- 3D 10HA: Crystal Structure of Honeybee (Apis mellifera) omega class glutathione S-transferase AmGST-O1
- 3D 10HM: Trypanosoma brucei CLK1 kinase domain in complex with a covalent Amidobenzimidazole (AB4) inhibitor
- 3D 10SD: The cryoEM structure of T10 type2 nanofiber
- 3D 10SG: The CryoEM structure of T12 type1 nanofiber
- 3D 10SH: The CryoEM structure of T12 type2 nanofiber
- 3D 11MG: Cryo-EM Structure of Human C3 Pro-Convertase bound to the Compstatin Analog Cp60, TED Conformation 1
- 3D 11MH: Cryo-EM Structure of Human C3 Pro-Convertase bound to the Compstatin Analog Cp60, TED Conformation 2
PDB Nitrogen Cycle
- 3D 12RH: Structure of turkey hemoglobin A covalently bound with epigallocatechin gallate
- 3D 21EJ: Crystal structure of a cupin protein (tm1459, H52A mutant) soaked in CuSO4
- 3D 23UB: Structure of the CYP102A1 Heme Domain with 2-(undecylcarbamoyl)benzoic acid
- 3D 23UH: Structure of the CYP102A1 Heme Domain with 2-(undecylcarbamoyl)benzoic acid and benzene
- 3D 27IL: Crystal structure of Imine Reductase Mutant(R7) from Actinoalloteichus hymeniacidonis in complex with NADPH
- 3D 29OI: AetF, a single-component flavin-dependent tryptophan halogenase, in complex with 8-bromotryptoline
- 3D 9EAX: CRYSTAL STRUCTURE OF THE FMN-BINDING DOMAIN OF HUMAN CYTOCHROME P450 REDUCTASE (MUTANT V164M)
- 3D 9EAY: CRYSTAL STRUCTURE OF THE FMN-BINDING DOMAIN OF HUMAN CYTOCHROME P450 REDUCTASE (MUTANT H183Y)
- 3D 9EAZ: CRYSTAL STRUCTURE OF THE FMN-BINDING DOMAIN OF HUMAN CYTOCHROME P450 REDUCTASE (MUTANT A229T)
- 3D 9EB0: CRYSTAL STRUCTURE OF THE FMN-BINDING DOMAIN OF HUMAN CYTOCHROME P450 REDUCTASE (MUTANT D211N)
PDB Photosynthesis
- 3D 22VL: Cryo-EM structure of Chlamydomonas reinhardtii chloroplast F1Fo-ATP synthase
- 3D 23UB: Structure of the CYP102A1 Heme Domain with 2-(undecylcarbamoyl)benzoic acid
- 3D 23UH: Structure of the CYP102A1 Heme Domain with 2-(undecylcarbamoyl)benzoic acid and benzene
- 3D 27IL: Crystal structure of Imine Reductase Mutant(R7) from Actinoalloteichus hymeniacidonis in complex with NADPH
- 3D 29OI: AetF, a single-component flavin-dependent tryptophan halogenase, in complex with 8-bromotryptoline
- 3D 9EAX: CRYSTAL STRUCTURE OF THE FMN-BINDING DOMAIN OF HUMAN CYTOCHROME P450 REDUCTASE (MUTANT V164M)
- 3D 9EAY: CRYSTAL STRUCTURE OF THE FMN-BINDING DOMAIN OF HUMAN CYTOCHROME P450 REDUCTASE (MUTANT H183Y)
- 3D 9EAZ: CRYSTAL STRUCTURE OF THE FMN-BINDING DOMAIN OF HUMAN CYTOCHROME P450 REDUCTASE (MUTANT A229T)
- 3D 9EB0: CRYSTAL STRUCTURE OF THE FMN-BINDING DOMAIN OF HUMAN CYTOCHROME P450 REDUCTASE (MUTANT D211N)
- 3D 9EB1: CRYSTAL STRUCTURE OF THE FMN-BINDING DOMAIN OF HUMAN CYTOCHROME P450 REDUCTASE (MUTANT T142A)
PDB PFAS Degradation
- 3D 9HLN: Crystal structure of MnmA D100C mutant from Streptococcus pneumoniae with [4Fe-4S] cluster in complex with formate
- 3D 9RFP: Peptidedeformylase XisD in complex with formiate
- 3D 9Q1E: Cryo-EM Structure of the MgtA Tetramer at 2.7 A Resolution
- 3D 9Q6O: Cryo-EM Structure of MgtA in the E2-P State at 2.7 A Resolution
- 3D 9VBQ: Crystal structure of FXR in complex with agonist XJ02862-S2
- 3D 9VBR: Farnesoid X Receptor Agonists_FXR fused with a HD3 peptide
- 3D 9ZLK: Cryo-EM structure of MgtA with bound AMPPCP and magnesium
- 3D 24UU: Crystal structure of Endonuclease IV from Chlamydophila pneumoniae
- 3D 9Z11: Crystal Structure of the Poly(Hexamethylene Adipamide) (Nylon66) Hydrolase Nyl50 in Complex with Butyrate at Room Temperature
- 3D 24HR: Human KRAS G12D (GDP-bound) in complex with macrocyclic peptide inhibitor AP6252
Project Gutenberg
- Oliver Twist EPUB PDF
- Pygmalion EPUB PDF
- Alice's Adventures in Wonderland EPUB PDF
- Hamlet EPUB PDF
- Frankenstein EPUB PDF
- Romeo and Juliet EPUB PDF
- The Bible, King James Version EPUB PDF
- A Tale of Two Cities EPUB PDF
- Anthem EPUB PDF
- The Republic EPUB PDF
- Metamorphosis EPUB PDF
- The Jungle Book EPUB PDF
- The Souls of Black Folk EPUB PDF
- Thus Spake Zarathustra EPUB PDF
- Notes from the Underground EPUB PDF
GitHub bioRxiv
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dbcls/togomcp
9
Python
MCP server for the RDF Portal (Public version)
-
dna-seq/just-dna-lite
121
Python
lite and fast version of just-dna-seq personalized genomic platform
-
anthropics/knowledge-work-plugins
21746
Python
Open source repository of plugins primarily intended for knowledge workers to us...
-
JSONbored/awesome-claude
269
MDX
HeyClaude is a curated registry and distribution surface for Claude and AI-workf...
-
grobidOrg/grobid
4953
Java
A machine learning software for extracting information from scholarly documents
-
Aperivue/medsci-skills
161
Python
Claude Code skills for medical research — literature search, reporting guideline...
-
MGXlab/Jaeger
10
Python
Jaeger is a quick and precise tool for detecting phages in sequence assemblies.
-
Yasas1994/Jaeger
37
Python
Jaeger is a quick and precise tool for detecting phages in sequence assemblies.
-
frankligy/pan_cancer_intracellular_antigen_atlas
12
Python
ImmunoVerse: A pan-cancer atlas of therapeutic T cell targets
-
brain-score/vision
186
Python
A framework for evaluating models on their alignment to brain and behavioral mea...
Synthetic Biology
- NAD(+) metabolism at the host-virus interface.
- Transcriptomic insights into the biocontrol mechanism of Trichoderma spp. against Fusarium wilt in melon.
- Stratification overcomes ABA-mediated seed dormancy by uncoupling RGL2/ABI5 inhibition from α-amylase expression.
- Overcoming cellular secretion bottlenecks: advanced secretion engineering and molecular tailoring for next-generation microbial α-amylases with enhanced industrial performance.
- Endogenous constitutive promoters with a broad range of transcriptional activities for plant synthetic biology.
- Lipopolysaccharide Biosynthesis-Related Genes, galU, ugd, waaC, waaG and waaL Are Required for Full Virulence of Pantoea ananatis.
- Enhancing Enzyme Activity With Mutation Combinations Guided by Few-Shot Learning and Causal Inference.
- Direct Photoredox Synthesis of N-Linked Glycoproteins.
- Cytotoxicity mechanism of heterologous expression of phospholipase D in Escherichia coli.
- Cross-regulation of amino acid synthesis and anaerobic electron transfer by MetR-mediated methionine signaling.
- Functional dissection of Corynebacterium glutamicum Wag31 domains for septal recruitment and polar distribution during the cell cycle.
- A viral protein hijacks the plant ethylene signaling to manipulate insect feeding behavior.
- Natural Variation of COLD and CATECHINS REGULATOR 1 Coordinately Fine-Tunes Cold Tolerance and Tea Quality in Tea Plants.
- Molybdate Causes Target and Nontarget Inhibitory Effects on Microbial Arsenic Methylation in Paddy Soil.
- Integrated transcriptomic and metabolomic analyses reveal biphasic thermal adaptation strategies in Lavandula angustifolia under high-temperature stress.
Biotechnology
- Nongenetic engineering nanozyme proximity labeling reveals subcellular in situ interactomes and trafficking pathways of nanoparticles.
- Pathogenic variants in ACTRT3 lead to male infertility characterized by fertilization defects.
- Insights into Cryoprotective Mechanisms of Food-Derived Antifreeze Peptides: Coordinated Regulation of Intra- and Extra-Cellular Protection.
- STAR Protocols question-and-answer series: CRISPR.
- Advances in oncolytic viruses immunotherapy of hepatocellular carcinoma.
- Overcoming cellular secretion bottlenecks: advanced secretion engineering and molecular tailoring for next-generation microbial α-amylases with enhanced industrial performance.
- Endogenous constitutive promoters with a broad range of transcriptional activities for plant synthetic biology.
- Morfo-anatomical insights into the germination and protocorm growth of the endangered Vanilla lindmaniana (Orchidaceae).
- NanoPop: Nanopore amplicon sequencing of Salmonella virulence genes to characterize complex mixed serovar populations using k-mers to overcome high sequencing error rates.
- TRIM31: A Novel Guardian Against Periodontal Inflammation via Modulation of NLRP3 Inflammasome and Macrophage Polarization.
- Genome-wide CRISPR screen identifies ELFN2 as a key regulator of host autophagy and lipid metabolism important for Toxoplasma gondii proliferation.
- Genomic Analysis of Ocular Pseudomonas aeruginosa Isolates: Insights From a Predominantly Asian, Multi-Regional Dataset.
- Degradation pathway of (R)-1,3-butanediol in Pseudomonas putida KT2440 and development of its biosensor.
- CRISPR-Cas12a-based fluorescent and visual assays for universal detection and clade discrimination of mpox virus.
- Structure basis for single-strand nucleic acid targeting by IscB and variants.
AI & Machine Learning
- An innovative deep learning paradigm for automated detection and accurate classification of lung nodules in magnetic resonance imaging.
- From spectra to chemical maps: SWIR hyperspectral imaging for non-destructive prediction of cellulose, hemicellulose, and lignin in golden-thread wood.
- Structure-based identification of potential antifungal agents against Aspergillus fumigatus through multiscale computational approaches.
- Free energy perturbation-assisted identification of checkpoint kinase 1 targeted small-molecule inhibitors for cancer therapy using AI- and physics-driven molecular design.
- QSPR modeling and multi-criteria ranking of antiviral drugs using degree-based topological indices, artificial neural networks, and TOPSIS.
- Leveraging Large Language Models to Integrate Clinical Knowledge and Machine Learning Predictions for Lymph Node Metastasis Prediction: Development of a Knowledge-Augmented Framework.
- Patient Perceptions on the Use of Artificial Intelligence in Creating Clinical Research Documents: Survey Study.
- Solidarity or Segregation? ChatGPT Health and US Health Care Disparities.
- Development of Data-Driven Models for Just-in-Time Digital Self-Management Advice to Improve Physical Functioning in Hip and Knee Osteoarthritis: Protocol for the e-cOAch Cross-Over Study.
- National Academy of Medicine Publication Review: An Artificial Intelligence Code of Conduct for Health and Medicine Essential Guidance for Aligned Action (2025).
- You Can't Launch This: Trust as Infrastructure in Digital Behavioral Health.
- [The misunderstandings in interpreting the "diagnostic superiority of Artificial Intelligence" and the explainable Artificial Intelligence].
- [Artificial intelligence in medicine: between algorithmic opacity and clinical responsibility].
- Algorithmic sycophancy: why artificial intelligence prioritizes agreeing with us over telling us the truth.
- Machine Learning for Monoclonal Gammopathy of Undetermined Significance Screening: Who, How, and Why?
Neuroscience
- Progressive intracranial venous reflux with cognitive decline in a hemodialysis patient: illustrative case.
- [Beyond the clinic: neuroimagenological findings in Sydenham chorea].
- [Ifosfamide-induced neurotoxicity. Clinical characteristics in a pediatric case series].
- Eye-Brain Neuroimmune Axis Enables Long-Term Survival in Glioblastoma by Modulating Brain Immune Surveillance and Neuronal Excitability.
- Metabolism-weighted brain connectome reveals synaptic integration and vulnerability to neurodegeneration.
- Long Coronavirus Disease 2019 and its Association with Noncommunicable Diseases: A Bibliometric Analysis.
- pyhgf: A neural network library for predictive coding.
- Expansion-Assisted Hybridization Chain Reaction-smFISH and Immunohistochemistry in Drosophila Brain.
- Artificial Intelligence for Predicting Secondary Complications and Clinical Outcomes in Traumatic Brain Injury: A Narrative Review.
- Health management practices in chronic traumatic brain injury rehabilitation: A scoping review protocol.
- MotionDPS: Motion-Compensated 3D Brain MRI Reconstruction.
- Vibrotactile intensity perception: Predominant influence of afferents recruited remote from stimulus site.
- AI-assisted thematic synthesis of existing neurological core outcome sets: A descriptive reference framework (COS-Neuro).
- GL-Net: A knowledge-guided Gaussian-gated and layered refinement network for 3D MRI segmentation of brain gliomas.
- A Semi-automated Method For Detecting Group Differences In Protocerebral Anterior Medial Cluster Dopaminergic Neuron Numbers In The Drosophila Brain.
Climate Science
- Ameliorative Effects of Vitamin C on Heat Stress-Induced Testicular Dysfunction in Wistar Rats.
- Vulnerability assessment to tropical cyclones in the North Caribbean Coast of Nicaragua (1988-2022).
- Occupational heat stress among female agricultural workers in the Jordan Valley, Palestine.
- Foliar structural and physiological responses of young Picea abies trees to elevated environmental humidity.
- Relative abundance of genes regulating proliferation and apoptosis of corpus luteum during cold and hot seasons in Egyptian buffaloes.
- Systematic review of ecological and environmental citizen science in India.
- The effects of economic and environmental strategies on typical dairy farms performance in the Lake Victoria Basin region of Kenya.
- Assessment of global research trends on technological and AI-driven strategies for mitigating climate-induced heat stress based on 20 years bibliometric database.
- Integration of machine learning and geospatial technologies for predicting forest cover change and carbon stock under Ethiopian Green Legacy Initiative.
- Acidification Dominates over Hypoxia in Controlling Estuarine Nitrogen Removal Dynamics under Coupled Stressors.
- Climate-Induced Genomic Selection: Genetic Structure Variation of Cornus kousa subsp. chinensis and Its Adaptive Reaction to Future Climate Change.
- Integrated transcriptomic and metabolomic analyses reveal biphasic thermal adaptation strategies in Lavandula angustifolia under high-temperature stress.
- Climate change effects on hydrologic processes and water quality in the Connecticut River watershed.
- The Impact of Climate Change on the Spatial Distribution of Seven Meconopsis Species in China: A MaxEnt Model-Based Predictive Analysis.
- Climate Change and Hydropower Impacts on Habitat Suitability of Endangered Schizothoracinae Fishes in the Qinghai-Xizang Plateau.
Medicine
- A network analysis of disgust proneness in a clinical, adolescent sample: Implications for the treatment of OCD.
- Nanozyme-augmented clinical drug strategy for dopaminergic restoration and oxidative stress mitigation to rescue motor and cognitive deficits in Parkinson's disease.
- Compound BOZA attenuates fibrosis in systemic sclerosis by modulating the PERK-HNRNPA1 axis.
- The role of the mesenchymal stem cell therapy in bone regeneration of osteoporosis: clinical translation and limitations.
- Structure-based identification of potential antifungal agents against Aspergillus fumigatus through multiscale computational approaches.
- Percutaneous hepatic perfusion versus best alternative care as treatment for metastatic uveal melanoma: A meta-analysis.
- The Influence of Vitamin C on Stromal and Epithelial Cells of the Pancreas in Malignant and Benign/Inflammatory Pancreatic Diseases: Protocol for a Scoping Review.
- Impact of Financial Incentives on Electronic Health Record-Driven Recruitment of Underrepresented Communities in Research: Randomized Controlled Trial.
- How a health play specialist's role and work is understood by health play specialists and paediatric multidisciplinary team members: An online qualitative survey study.
- Conscience Clause Laws Already Permit Secular Hospitals to Withhold or Withdraw Life-Sustaining Treatment over Surrogate Objections.
- Patient Perceptions on the Use of Artificial Intelligence in Creating Clinical Research Documents: Survey Study.
- Summary for Patients: Benefits and Harms of Immediate Versus Delayed Treatment of Cervical Intraepithelial Neoplasia Grade 2.
- Benefits and Harms of Immediate Versus Delayed Treatment of Cervical Intraepithelial Neoplasia Grade 2 : A Target Trial Emulation.
- Cancer intrinsic protein neddylation modulates the intra-tumoral immune landscape to constrain immune checkpoint blockade therapy.
- Contribution of ParC -and GyrA- mutations to fluoroquinolone treatment failures in Mycoplasma genitalium: a systematized review.
Genomics
- Cancer intrinsic protein neddylation modulates the intra-tumoral immune landscape to constrain immune checkpoint blockade therapy.
- [Innate immune memory - Trained immunity: Current concepts and clinical implications].
- Graphylo Var: Predicting the impact of non-coding variants using a multi-species sequence model.
- Aspirin for Stroke Primary Prevention: A Step Toward Genetic-Driven Personalized Medicine.
- Validation of Random Transgene Integration and Expression in Eimeria Parasites.
- Whole genome sequencing for CKD of unexplained cause in Hong Kong.
- ScopeViewer: A Browser-Based Solution for Visualizing Large Biological Images.
- Protocol for mitochondrial DNA extraction, purity evaluation, and global methylation assessment via LC-MS/MS.
- Luteococcus struthionis sp. nov. and Lacrimispora struthionigena sp. nov. isolated from ostrich faeces.
- Transcriptomic insights into the biocontrol mechanism of Trichoderma spp. against Fusarium wilt in melon.
- Mechanistic and functional integration of sirtuin deacylases: from substrate specificity to biological outcomes.
- Methylmalonic acid as a ferroptosis-derived danger signal: activation of the PI3K-NF-κB pathway drives M1 macrophage polarization in renal ischemia-reperfusion injury.
- Whole genome insights into hydrocarbon degradation and antimicrobial resistance in Staphylococcus epidermidis CSR1 isolated from oil-contaminated soil.
- Convergent Functional Genomic Evolution Underlying Repeated Freshwater Colonization in Cetaceans.
- Genomic, Probiotic, and Safety Characterization of Lactiplantibacillus Plantarum L-1 and the Anti-Biofilm Activity of its Bacteriocin Against Listeria Monocytogenes.
Immunology
- Missed opportunities for Hepatitis C Virus screening and care among persons hospitalized for injection-related infections.
- Eluted blood group antigens: A diagnostic challenge in red cell antibody identification - A case series.
- Addressing Vaccine Hesitancy Amid Changing Federal Guidance.
- When Vaccine Guidance Fractures: the Ethics Consultant's Role in Restoring Clinical Confidence.
- When Chest Pain Unmasks the Liver: Acute Pericarditis Leading to the Diagnosis of AIH-PBC Overlap Syndrome.
- Deconvolving SARS-CoV-2 mRNA vaccine impact on immunotherapy-related survival.
- [Innate immune memory - Trained immunity: Current concepts and clinical implications].
- [Effect of exclusive breastfeeding on infant hospitalizations].
- A Chemically Defined Four-Component Self-Adjuvanting Tn Vaccine Activating Mincle, FcγR, and CD206 for Enhanced Antitumor Immunity.
- A randomized controlled study to compare the efficacy of intravitreal faricimab 6.0 mg versus aflibercept 2.0 mg in management of treatment-naive diabetic macular edema in Indian populations.
- Challenges and Future Trends in Large Vessel Vasculitis.
- CD69 blockade restores the bone marrow niche and delays leukemogenesis in a mouse model of Nras (G12D)-driven chronic myelomonocytic leukemia.
- Maturation of HIV-1 neutralizing antibodies in a germinal center conditional expression mouse model.
- An Immune system for the city: A cluster-randomized trial of a new paradigm for surveillance and control of disease vectors.
- A Multilabel Single Molecule Localization Microscopy Protocol for Investigation of Chromatin in the Dense Nuclear Environment.
Microbiology
- Doxycycline post-exposure prophylaxis may dramatically reduce syphilis among gay, bisexual, and other men who have sex with men: a modeling study.
- [Lemierre-like syndrome, an emerging diagnosis].
- Light-Activated Ruthenium Nanoclusters Reprogram the Metabolic-Quorum Sensing Axis for Precision Periodontitis Therapy.
- SLC11A2 withholds divalent metals from Salmonella in the gut epithelium.
- Hepatitis B virus genome packaging and replication are coordinated by a polymerase-responsive RNA switch in the RNA element epsilon.
- Insights into the clinical presentation, imaging, and management of infiltrative keratitis following accelerated corneal collagen cross-linking.
- CoDaLoMic: An R package for modeling microbiome compositional and longitudinal data.
- Applying PCR cycle autonormalization to PacBio full-length 16S rRNA library preparations: impacts on error rates and sequence distributions.
- Dual-Recognition AIEgens-Lysozyme Assemblies for Interpretable Machine Learning-Enabled Sensor Arrays: Toward Rapid and Transparent Surveillance of Microbial Threats.
- The Plastisphere: not a unique biofilm but a unifying concept for the interdisciplinary plastic biofilm research community.
- The respiratory microbiome: dynamics from health to disease.
- Addition of blood-stage antibody enhances anti-sporozoite antibody protection in a humanized mouse model of Plasmodium falciparum infection.
- Transcriptomic insights into the biocontrol mechanism of Trichoderma spp. against Fusarium wilt in melon.
- Unravelling the associations between local environmental factors, soil properties and cultivable root-associated endophytes in dry pea (Pisum sativum L.).
- Rethinking Head and Neck Atopic Dermatitis: Pathogenic Axes and Emerging Therapeutic Directions.
Evolutionary Biology
- The contingent advantage of photosymbiosis in coral evolution.
- Competing models of hominin body size evolution.
- Atomic Evolution of Hydrogen Intercalation Wave Dynamics in Palladium Nanocrystals Revealed by Liquid-Phase Transmission Electron Microscopy.
- Repeated evolution of iridescence and hindwing tails is associated with morphometric flight proxies in skipper butterflies.
- Navigating the semantic labyrinth of "sex" in the study of reproductive trait evolution.
- The evolution of nonoperating room anesthesia: navigating a new frontier.
- Convergent Functional Genomic Evolution Underlying Repeated Freshwater Colonization in Cetaceans.
- From Oak to Wine: Evolution, Admixture, and Adaptation of California and British Columbia Saccharomyces cerevisiae Wine Strains.
- Temperature-dependent γ' kinetic evolution and elemental partitioning in a novel CoNi-based superalloy: an integrated CALPHAD, phase-field, and experimental study.
- Longitudinal Single-Cell RNA-Sequencing Reveals Evolution of Micro- and Macro-states in Chronic Myeloid Leukemia.
- Following the NOSE: when surgical evolution outpaces the evidence.
- Study on the Reaction Mechanism of RuO(x) and Its Enhanced Hydrogen Evolution Reaction Activity.
- The evolution of China's youth sport policies-a systematic analysis based on national policy texts 2013-2023.
- The multichromosomal structure evolution of Dendrobium mitogenomes and new insights into interrelationships of recently radiated tribes in Epidendroideae (Orchidaceae).
- Resolution of childhood wheat allergy through evolution into WALDA? A case report.
Molecular Ecology
- Multidimensional diversity patterns and community assembly of wintering waterbirds in isolated lakes within an intensively farmed floodplain.
- Speciation History Shapes Patterns of Assemblage Species Richness in Birds.
- High-severity fire now dominant in California forests.
- Focus Stacking Protocol for High-Resolution Insect Photography.
- Applying PCR cycle autonormalization to PacBio full-length 16S rRNA library preparations: impacts on error rates and sequence distributions.
- Systematic review of ecological and environmental citizen science in India.
- Typology of Agricultural Land Systems in Germany to Support Tailoring of Agri-Environmental Schemes to Reduce Pressures on Farmland Biodiversity.
- From Oak to Wine: Evolution, Admixture, and Adaptation of California and British Columbia Saccharomyces cerevisiae Wine Strains.
- Carpenter bees (Apidae: Xylocopa) of Ecuador: distribution, DNA barcodes and plant interactions.
- Pueraria mirifica: a critical review of the ethnobotany, phytochemistry, pharmacology and challenges in standardization and safety.
- Opposing diversity-stability relationships within versus between aquatic producers and consumers.
- Louse Flies on the Fly: Host Macroecology Shapes Interspecific Variation in Ectoparasite Prevalence Among Migrating Birds.
- Climate Change and Hydropower Impacts on Habitat Suitability of Endangered Schizothoracinae Fishes in the Qinghai-Xizang Plateau.
- Ensemble Modeling Reveals Severe Contraction of Dhole's (Cuon alpinus Pallas, 1811) Suitable Habitat and Future Climate Refugia Across China.
- Turnover-Dominated β-Diversity and Its Temperature and Trophic Drivers of Scarabaeoidea Assemblages Along an Elevational Gradient in a Tropical Island Rainforest in China.
arXiv Physics
- PDF State estimation of Rayleigh-Bénard convection with reduced-order models
- PDF A Defect-Free Model of Amorphous Silicon with Pristine Electronic Structure
- PDF West Nile virus outbreak in Italy modelled with the quantum Game of Life
- PDF Optimal Order of Multi-Agent and General Many-Body Systems
- PDF Agentic Symbolic Search: Characterizing PDEs Beyond Hand-crafted Expressions, Meshes, and Neural Networks
- PDF Polaronic hybridization of atoms, dimers and trimers in a Bose-Einstein condensate
- PDF Plasma Etch Process Optimization for Photonic-Grade Diamond-on-Insulator Substrates and Thickness Evaluation using Colorimetry
- PDF Efficient and Accurate Image Reconstruction for Geometric-Inconsistent Multispectral CT with Ray-Dependent Energy Spectra
- PDF Attosecond Path Qubits in High-Harmonic Generation: Classical Dephasing and Trace-Out Decoherence
- PDF Determination of the intrinsic mechanical quality factor in high-stress silicon nitride resonators
- PDF Planar Lagrangian transport and scalar-gradient organization in a turbulent reacting shear layer
- PDF Observation of alignment tensor effects in metastability-exchange collisions with highly polarized 3He ensembles
- PDF Constrained hybrid modelling to predict microbial dynamics and organic matter turnover in soil systems
- PDF Effective Faraday interaction between light and Helium-3 nuclear spins in a multi-pass cell
- PDF Quantum-classical physics-informed Kolmogorov-Arnold networks for PDEs
arXiv Mathematics
- PDF Optimal Deterministic Multicalibration and Omniprediction
- PDF The Token Is a Group Element: On Lie-Algebra Attention over Matrix Lie Groups
- PDF On Second-Order Methods for Bilevel Optimization
- PDF Positive Scalar Curvature Obstructions via Singular Dimension Descent
- PDF Approximation and interactive design with exact 3D elastic curves
- PDF Planar constant piecewise smooth vector fields with large hysteresis
- PDF On the Emergence of Discrete Spectrum for Weakly Disordered Schrödinger Operators
- PDF CLUSTER: Derivative-free optimization of smooth functions with parameter-change costs
- PDF CoarseSolvers for Exascale Solution of Poisson Problems
- PDF Strong non-principality of positive codegree Turán density
- PDF Minimizers for Coulomb gases constrained to a halfspace
- PDF The alignment time function
- PDF Leveraging tails for adaptation
- PDF Invariants of the Colored Braid Groupoid
- PDF Rigidity of coarsely minimal Reeb flows
arXiv Computer Science
- PDF JanusMesh: Fast and Zero-Shot 3D Visual Illusion Generation via Cross-Space Denoising
- PDF MemoryWAM: Efficient World Action Modeling with Persistent Memory
- PDF TimeProVe: Propose, then Verify for Efficient Long Video Temporal Reasoning in Activities of Daily Living
- PDF How Transparent is DiffusionGemma?
- PDF UNIEGO: Proxies as Mediators for Unified Egocentric Video Representation Learning
- PDF Optimal Deterministic Multicalibration and Omniprediction
- PDF Thinking in Boxes: 3D Editing in Real Images Made Easy
- PDF Structuring and Tokenizing Distributed User Interest Context for Generative Recommendation
- PDF From Efficiency to Leakage -- Privacy Backdoor in Federated Language Model Fine-Tuning
- PDF Easy Reads: A Python program for making Scientific Papers on arXiv more Reader Friendly and Accessible
- PDF Generating Robot Hands from Human Demonstrations
- PDF The Token Is a Group Element: On Lie-Algebra Attention over Matrix Lie Groups
- PDF Predictability as a Fine-Grained Measure for Privacy
- PDF Current World Models Lack a Persistent State Core
- PDF Toward Calibrated Mixture-of-Experts Under Distribution Shift
arXiv Quantitative Biology
- PDF West Nile virus outbreak in Italy modelled with the quantum Game of Life
- PDF Synchronization modes in bipartite oscillator networks
- PDF bioETH-Beacon: A Confidential On-Chain Genomic Beacon with Encrypted Counts, Filters, and Bounded Noise over a Fully Homomorphic EVM
- PDF DeepForestVisionV2: Ecology-Driven Taxonomy Expansion for Camera-Trap Monitoring in African Tropical Forests
- PDF MedRLM: Recursive Multimodal Health Intelligence for Long-Context Clinical Reasoning, Sensor-Guided Screening, Evidence-Grounded Decision Support, and Community-to-Tertiary Referral Optimization
- PDF Quadratic Forms for Measuring Geometric Trees in 3-dimensional Space
- PDF Oscillations and Spatial Patterns in Large-Scale Stochastic Gene Regulatory Networks
- PDF Robust probabilistic measurement of structural-functional module consistency in infant brain development
- PDF CollaboratoR: A scalable workflow for collaborative data entry and management
- PDF Retrieval-Based Brain Decoding by Alignment, not Complexity
- PDF Multi-type branching inference on contact trees with application to COVID-19
- PDF BioHarness: Substrate-Aware Evidence Assembly for Biomedical Question Answering across Literature, Knowledge Bases, and Biological Atlases
- PDF Contextualizing Biological Language Models across Modalities via Logit-Space Contrastive Alignment
- PDF scGTN: Deep Siamese Graph Transformer Network for Single-cell RNA Sequencing Clustering
- PDF Can neurons speak? Semantic narration of vision at single-cell resolution
arXiv Quantitative Finance
- PDF Optimal Order of Multi-Agent and General Many-Body Systems
- PDF Advanced Calibration Analysis and Tools: Identifying Influential Observations in Stochastic Interest Rate Model Calibration
- PDF Trends, Volatility, Correlations, and Critical Phenomena in Financial Markets
- PDF How to spot outliers: an Ensemble Anomaly Detection Framework
- PDF AI Economist Agent: An Agentic Framework for Model-Grounded Economic Analysis with RAG, Knowledge Graphs, and Large Language Models
- PDF Which Portfolios? The Construction Dependence of Factor Model Performance
- PDF Do Prediction Markets Match Option Prices? Bitcoin Threshold Evidence from Binance and Polymarket
- PDF DeXposure-Claw: An Agentic System for DeFi Risk Supervision
- PDF Fitting Accumulated Stock Returns with Tempered Skew t-Distribution
- PDF An extendable, integrated, and dynamic approach to forecasting and stress-testing credit risk
- PDF Collective completeness and pricing-hedging duality II
- PDF Optimal Consumption and Retirement Time under Shortfall Risk Measure
- PDF The Gini-Bayes Connection: The CAP Slope as Bayes' Theorem, with Applications to Weight of Evidence, Somers' $D$, and Calibration
- PDF Conformal Prediction Intervals with Tail-Specific Guarantees
- PDF Continuous-time Optimal Stopping through Deep Reinforcement Learning