Protein Data Bank
- 3D 10DQ: Cbf1-CCAN-CEN complex
- 3D 10FI: apo CCAN purified from budding yeast
- 3D 10JC: CCAN dimer purified from budding yeast
- 3D 10KU: Structure of hNSP4-S218A bound to MCP3 at 2.09 A resolution
- 3D 10KV: Structure of hNSP4 bound to MCP4 at 2.75 A resolution
- 3D 10OH: Structure of Clostridium difficile Toxin B (TcdB) glucosyltransferase in complex with UDP and isofagomine analog 2-4
- 3D 10OI: Structure of Clostridium difficile Toxin B (TcdB) glucosyltransferase in complex with UDP linked isofagomine analog 3-5
- 3D 10QV: Crystal Structure of NQO1 Complexed with S-Warfarin
- 3D 11GY: Crystal structure of selective inhibitor 16 bound at the active site of CDK1
- 3D 11ZT: Kindlin-3/Integrin Beta2 Cytoplasmic Tail Complex
PDB Nitrogen Cycle
- 3D 10QV: Crystal Structure of NQO1 Complexed with S-Warfarin
- 3D 20YY: Cryo-EM structure of MexJK from Pseudomonas aeruginosa
- 3D 29TJ: Structure of the Porcine Reproductive and Respiratory Syndrome virus-2 glycoprotein GP4 antigenic region 59-69 bound to the neutralizing scFv#18
- 3D 9L94: State G of archaeal pre-50S ribosome
- 3D 9L98: State C of archaeal pre-50S ribosome
- 3D 9L9K: State E of archaeal pre-50S ribosome
- 3D 9R9M: Crystal Structure of human MLH1 C-terminal domain with cyclic peptide (2S)-N-[(6S,9S,12S,15S,18S,26aR)-12-(4-aminobutyl)-18-benzyl-21-(2-carbamoyle...
- 3D 9RRK: Hen egg-white lysozyme (HEWL) collected at the European XFEL, SPB/SFX at the Interaction Region Downstream with 9.6 keV photon energy
- 3D 9VML: Structure of Trypanothione Reductase from Leishmania donovani
- 3D 9VP9: GH64 family beta-1,3-glucanase from Massilia violaceinigra in complex with a glucose disaccharide
PDB Photosynthesis
- 3D 10QV: Crystal Structure of NQO1 Complexed with S-Warfarin
- 3D 9L94: State G of archaeal pre-50S ribosome
- 3D 9L95: State F of archaeal pre-50S ribosome
- 3D 9L96: State D of archaeal pre-50S ribosome
- 3D 9L98: State C of archaeal pre-50S ribosome
- 3D 9L9J: State H of archaeal pre-50S ribosome
- 3D 9L9K: State E of archaeal pre-50S ribosome
- 3D 9L9V: State A of archaeal pre-50S ribosome
- 3D 9S6P: Local refinement of a PSI monomer of A. marina NIES-2412
- 3D 9SK3: Trimeric photosystem I of Acaryochloris marina NIES-2412
PDB PFAS Degradation
- 3D 21DT: X-ray structure of the Haloalkane dehalogenase HaloTag7 labeled with BD566-HTL substrate
- 3D 9HLN: Crystal structure of MnmA D100C mutant from Streptococcus pneumoniae with [4Fe-4S] cluster in complex with formate
- 3D 9RFP: Peptidedeformylase XisD in complex with formiate
- 3D 9Q1E: Cryo-EM Structure of the MgtA Tetramer at 2.7 A Resolution
- 3D 9Q6O: Cryo-EM Structure of MgtA in the E2-P State at 2.7 A Resolution
- 3D 9VBQ: Crystal structure of FXR in complex with agonist XJ02862-S2
- 3D 9VBR: Farnesoid X Receptor Agonists_FXR fused with a HD3 peptide
- 3D 9ZLK: Cryo-EM structure of MgtA with bound AMPPCP and magnesium
- 3D 24UU: Crystal structure of Endonuclease IV from Chlamydophila pneumoniae
- 3D 9Z11: Crystal Structure of the Poly(Hexamethylene Adipamide) (Nylon66) Hydrolase Nyl50 in Complex with Butyrate at Room Temperature
Project Gutenberg
- Moby Dick EPUB PDF
- Grimms' Fairy Tales EPUB PDF
- The Wonderful Wizard of Oz EPUB PDF
- The Adventures of Tom Sawyer EPUB PDF
- The Critique of Pure Reason EPUB PDF
- The Masque of the Red Death EPUB PDF
- The Brothers Karamazov EPUB PDF
- The Adventures of Sherlock Holmes EPUB PDF
- The Kama Sutra EPUB PDF
- The Invisible Man EPUB PDF
- Meditations EPUB PDF
- Thus Spake Zarathustra EPUB PDF
- The Hunchback of Notre Dame EPUB PDF
- The Fall of the House of Usher EPUB PDF
- The Souls of Black Folk EPUB PDF
GitHub bioRxiv
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corinalogan/grackles
6
TeX
The Grackle Project's research plans/materials and articles
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vgteam/vg_wdl
25
WDL
Workflow Description Language (WDL) scripts for common vg workflows
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COMBINE-lab/alevin-fry
212
Rust
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell se...
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GoyalLab/CIPHER
8
Jupyter Notebook
CIPHER: Covariance Inference for Perturbation and High-dimensional Expression Re...
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JSONbored/awesome-claude
278
MDX
HeyClaude is a curated registry and distribution surface for Claude and AI-workf...
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cottrell/mybin
5
Python
misc scripts and notes
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grobidOrg/grobid
4983
Java
A machine learning software for extracting information from scholarly documents
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FJingxian/JanusX
32
Rust
A high-performance, ALL-in-ONE suite for quantitative genetics that unifies geno...
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hkevin01/eeg-rag
7
Python
EEG-RAG is a Retrieval-Augmented Generation (RAG) system specifically designed f...
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pg-space/panspace
22
Jupyter Notebook
Embedding-based indexing for compact storage and rapid querying of bacterial pan...
Synthetic Biology
- Identification of cellular intermediates unveils unique enzymes for flagellar glycan biosynthesis in Clostridioides difficile.
- Covalent phytobilin adducts of GUN4 implicate a photoprotective mechanism in chlorophyll biosynthesis.
- Novel duck reovirus σC hijacks the mitochondrial COQ6-CoQ10 axis to drive NLRP3-dependent pyroptosis.
- PhageMind: generalized strain-level phage host range prediction via meta-learning.
- seq2ribo: structure-aware integration of machine learning and simulation to predict ribosome location profiles from RNA sequences.
- Japanese encephalitis virus hijacks the host purine biosynthetic network to promote viral replication in neurons.
- Processes and Products Derived from Lignocellulosic Feedstock: A Biorefinery Approach.
- Sotagliflozin pretreatment attenuates acute LPS-induced depression-like behavioral abnormalities and modulates the gut microbiota-immune-brain axis.
- A Wagner-Meerwein-Like Rearrangement Generates a Vinyl Group in the Biosynthesis of the Polychlorinated Lipopeptides Fischerazoles.
- Cysteine, methionine and pantothenic acid remodel the Saccharomyces cerevisiae transcriptome and volatile sulphur compound metabolome during alcoholic fermentation.
- Cytosolic transmembrane helices enter the ER membrane through EMC6-driven electrostatic interactions.
- Biotechnologically Derived Materials as Drug Delivery Systems for Tissue Regeneration.
- Synergistic Enhancement of Fecal GABA Content by Bifidobacterium adolescentis 4-2 and Mannooligosaccharides in a Human Intestinal Flora Model.
- Correction to "Melatonin Delays Leaf Senescence of Chinese Flowering Cabbage by Suppressing ABFs-Mediated Abscisic Acid Biosynthesis and Chlorophyll Degradation".
- Multi-tissue Metabolic GWAS and Drought-Responsive Multi-omics Reveal the Genetic Basis of the Quinoa Metabolome.
Biotechnology
- Implementing the CRISPR 2.1 array for genotyping enhances identification of uropathogenic Escherichia coli in Colombian pediatric patients.
- The RNA-binding dynamics of the exon-junction complex underlying splicing-coupled RNA fate determination in Arabidopsis.
- Ligand-dependent enhancer activation indirectly modulates non-target promoters in a chromatin domain.
- Deciphering key factors of active learning performance in biomolecular design.
- CROP: a feature-independent context-aware method for CRISPR-Cas9 frameshift prediction.
- Paper Microfluidic Platform Using Multiplexed Isothermal Amplification and CRISPR/Cas12a for Aquatic Pathogen Detection.
- Protocol for generating multiplexed prime-edited monoclonal cell lines in porcine fetal fibroblasts.
- Targeting the Gut-Heart Axis in Atherosclerosis: Microbial Metabolites, Molecular Mechanisms, and Precision Therapeutics.
- From Gene Function to Precision Intervention: CRISPR/Cas9 and Stem Cell-Based Strategies as Emerging Disease-Modifying Approaches in PMOS.
- Genes, Putative Long-Lived mRNAs and Pathways Underlying Genotypic Differences in Rice Seed Storability and Seed Dormancy.
- Enhanced Endocytosis and Mitochondrial Stress Underlie Severe Retinitis Pigmentosa With RHO P347L Mutant.
- Biotechnologically Derived Materials as Drug Delivery Systems for Tissue Regeneration.
- Arrayed single-gene perturbations identify drivers of human anterior neural tube closure.
- Optimised genome editing for precise DNA insertion and substitution using prime editors in zebrafish.
- Isothermal amplification techniques for rapid bacterial detection: alternatives to culturing and PCR-based methods.
AI & Machine Learning
- From single targets to circuits diversified discovery and development strategies towards new paradigms for non-opioid analgesics.
- A Comparative Study of Generative Artificial Intelligence Versus Clinical Experts for Evidence-Based Decision-Making in Austere Environments.
- Equity and Automation in Clinical Trial Screening: Risks and Responsibilities of Artificial Intelligence‑Enabled Matching and Enrollment Systems.
- Artificial Intelligence in Everyday Surgical Practice: A Practical Review.
- Dual-Mode Nucleation and Dynamic Alloying of Silicon on Ag(111).
- A deep learning model captures position-specific preferences of plant regulatory sequences and suggests genes under complex regulation.
- AI Meets Attitudes: Cross-Sectional Quantitative Study of COVID-19 Vaccine Hesitancy in Alaska's Diverse Communities.
- Deep Plasma Proteomics-Based Diagnostic Panel for Early Detection of Amnestic Mild Cognitive Impairment.
- The CARE Model: A Framework for Artificial Intelligence Integration in Chronic Disease Management.
- Evaluation of the Applicability of Synthetic Data in the Development of Colorectal Cancer Survival Prediction Models: External Validation of Advanced Machine Learning Models Based on National Cancer Data Center Data.
- Feasibility of Tailoring Artificial Intelligence-Assisted Ambient Scribes for Intensive Care Unit Rounds: Algorithm Development and Validation.
- Dendritic morphology and synaptic nonlinearities enhance functional complexity in human cortical neurons.
- First-Principles Calculations and Machine Learning for Nonradiative Relaxation of Charge Carriers at Nanostructured Ag(n)Si(111) Monolayered Surfaces.
- Magnetic Resonance Imaging-Based Artificial Intelligence in Predicting Prostate Cancer Biochemical Recurrence: Systematic Review and Meta-Analysis.
- Exploring the Experiences of Moderators From an Asynchronous Online Dementia Support Forum: Qualitative Interview Study.
Neuroscience
- The dual nature of alpha oscillations: Linking local rhythms to network function and dysfunction.
- Brain-Only Progression After First-Line Therapy in Extensive-Stage Small Cell Lung Cancer: Treat the Sanctuary, Preserve the Backbone.
- Deep Plasma Proteomics-Based Diagnostic Panel for Early Detection of Amnestic Mild Cognitive Impairment.
- Examining Cost Differences in Malignant Brain and Central Nervous System Tumor Treatment Across US Military Health System Care Settings.
- Cell competition overcomes host tissue resistance to unleash tumor growth in a Drosophila brain cancer model.
- Human and animal morbillivirus strains causing chronic neurological infections share key genotypic and phenotypic traits.
- Post-stroke acute heart failure in patients with large vessel occlusion undergoing endovascular treatment: A pooled analysis of individual patient data from multicenter studies with mediation analysis.
- Prognostic significance of nutritional status for neurological and functional recovery after cervical spinal cord injury.
- Linking affective symptoms and brain morphology in cocaine use disorder: An integrated network approach.
- Elezanumab for the treatment of spinal cord injury: assessing the clinical development journey to date.
- Striatal neuron dysfunction in C9ORF72-FTD/ALS is driven by AIS and potassium channel dysregulation.
- [Functional cognitive disorders and dissociative amnesia: the contribution of double listening].
- Alteration of individual morphological brain networks in preschool children with autism spectrum disorder.
- Dysfunctional Mitochondria in Microglia Drive Cognitive Aging and Neurodegeneration via cGAS-STING.
- Quantitative Cerebrovascular Analysis for Improved Prediction of Post-Stroke Complications.
Climate Science
- Divergent trait controls on soluble sugars and starch underlie global strategies of tree carbohydrate storage.
- Divergent population trajectories despite similar response to temperature in a widespread aerial insectivore.
- Tracing Spatiotemporal Variability of Water Quality and Surface Water-Groundwater Interaction in Seasonal River Basins Using Source Apportionment Models of Hydrochemistry and Isotopes.
- Nanoparticles in Plant Abiotic Stress Resilience.
- "When the climate changes, we feel it first": Gendered perceptions of environmental change and women's health in Pakistan.
- Extreme heat and mental health: systematic review and qualitative investigation of risk and protective factors.
- Chytridiomycosis infection and heat compromises sperm quality in a threatened frog.
- Isolation and Connectivity: Population Structure of an Ectomycorrhizal Truffle in the Fragmented Mountain Landscape of the Madrean Sky Island Archipelago.
- Impact of climate-induced compositional shifts of ethanol and acidity on aroma release and perception in red wine: a case study on γ-nonalactone and massoia lactone.
- Mindfulness and sustainable diets: a meta-analysis and CO(2) emission savings scenarios.
- Investigating environmental heat exposure and its effects on maternal and fetal health in rural Northern Ghana (Physio-HeMAB Study): a study protocol for a cluster randomized trial.
- Sustainable diets and functional foods for the prevention of cardio-metabolic diseases and sustainable development goals of the UNO. An international consensus of scientific statement of the international college of nutrition and 28th world congress on clinical nutrition, Bogor, Indonesia.
- A comparative approach to analyzing and forecasting carbon dioxide emissions in ethiopia using Bayesian autoregressive integrated moving average (ARIMA) and Bayesian structural time series (BSTS) models.
- Nonlinear effect and spatiotemporal heterogeneity of urban resilience on surface urban heat Island in the Guanzhong urban agglomeration.
- High-throughput sequencing reveals that microRNA-based regulation, cell wall remodeling and phytohormone signaling orchestrate wheat seminal root development.
Medicine
- The dual nature of alpha oscillations: Linking local rhythms to network function and dysfunction.
- From single targets to circuits diversified discovery and development strategies towards new paradigms for non-opioid analgesics.
- Huntington's disease in the era of somatic instability, biomarkers, and targeted therapies: A narrative review.
- Using a self-efficacy framework in the management of inducible laryngeal obstruction (ILO): A tutorial with illustrative case scenarios.
- [New perspectives in the management of dyslipidemia and the role of PCSK9 inhibitors].
- Prime-edited isogenic hiPSC-derived cardiomyocyte model of short QT syndrome type 3 reveals electrophysiological phenotypes and differential drug responses.
- Diabetes mellitus exacerbates myasthenia gravis by upregulating CD40 expression on B cells through the RAGE-HIF-1α-HK2 pathway.
- Icariin ameliorates gestational diabetes mellitus by targeting the S100A9-mediated RAGE pathway to activate mitophagy.
- From diabetic foot to dementia: A neurovascular continuum linking systemic diabetic vasculopathy, cerebral small vessel disease, and glymphatic dysfunction.
- Refining free fatty acid receptor agonism for metabolic control: Pharmacological and functional features of novel dual GPR40/GPR120 ligands.
- ECCO Guidelines on Therapeutics in Ulcerative Colitis: Medical Treatment.
- A Lung-Targeted γδ T Cell Nanovaccine Couples Pulmonary Immune Priming to Systemic Antitumor Immunity in Non-Small-Cell Lung Cancer.
- Ethical issues in implantable medical devices: future of care or Orwellian nightmare?
- Loneliness From the Digital Mental Health Practitioners' Perspective: Thematic Analysis of Semistructured Interviews.
- Equity and Automation in Clinical Trial Screening: Risks and Responsibilities of Artificial Intelligence‑Enabled Matching and Enrollment Systems.
Genomics
- Morphological and functional diversity of spatially resolved vestibular ganglion neuron cell types.
- A disentangled transformer-based transfer learning framework to predict patient drug response from tumor single-cell transcriptomics.
- CPS: mapping physical coordinates to high-fidelity spatial transcriptomics via privileged multi-scale context distillation.
- A dependency-aware deep generative model for inferring RNA velocity from spatial transcriptomics.
- Riemannian metric learning for alignment of spatial multiomics.
- Phlag: scalable detection of genomics regions with unexplained phylogenetic heterogeneity.
- R4ST: a reference-guided graph-generative model for robust reconstruction of spatial transcriptomic profiles.
- NoisyFlow: differentially private optimal transport using neural networks for secure biomedical data sharing across multiple institutions.
- Diffusion-based representation integration for foundation models improves spatial transcriptomics analysis.
- Striping artifact removal in VisiumHD data through nuclear counts modeling.
- Likelihood-based optimization enables accurate copy number estimation for paralogous genes using exome data.
- Amaranth: enhanced single-cell transcript assembly via discriminative modelling of UMI reads and internal reads.
- DNA-aware evaluation and debiasing of sequence-to-function models.
- DiSPA: differential substructure-pathway attention for drug response prediction.
- Agentomics: an agentic system that autonomously develops novel state-of-the-art solutions for biomedical machine learning tasks.
Immunology
- Efficacy of microencapsulated organic acids-cinnamon blend as alternatives to antibiotic growth promoters: Assessing performance, gut histomorphometry, ileal digestibility, immunity, and antioxidant status in broilers.
- Diabetes mellitus exacerbates myasthenia gravis by upregulating CD40 expression on B cells through the RAGE-HIF-1α-HK2 pathway.
- The food additive microbial transglutaminase is a potential new environmental inducer of autoimmune diseases.
- A Lung-Targeted γδ T Cell Nanovaccine Couples Pulmonary Immune Priming to Systemic Antitumor Immunity in Non-Small-Cell Lung Cancer.
- AI Meets Attitudes: Cross-Sectional Quantitative Study of COVID-19 Vaccine Hesitancy in Alaska's Diverse Communities.
- The Orthohantavirus G(N)/G(C) Spikes: Molecular Determinants of Infection and Targets for Antiviral Immune Interventions.
- Intracellular structural modifications of natural peptidoglycan fragments preceding NOD2 signaling in mammalian cells.
- Development of a COVID-19 Vaccination Anxiety Scale to measure COVID-19 vaccine anxiety in Japanese adults.
- PU-GRAIL: residue-level graph learning for identifying protective bacterial antigens under positive-unlabeled supervision.
- USP-ddG: a unified structural paradigm with data efficacy and mixture-of-experts for predicting mutational effects on protein-protein interactions.
- A piezoelectric electroporator (Piezopen) for enhanced "naked" RNA vaccine delivery.
- A rotavirus vaccine candidate attenuated by codon deoptimization protects neonatal mice against wild-type virus infection.
- Patterns of spike-specific IgG subclasses after different types of COVID-19 vaccines in patients with hereditary angioedema due to C1 inhibitor deficiency.
- Transportability of tislelizumab trial outcomes from RATIONALE-315, RATIONALE-303, and RATIONALE-312 to the European population in early-stage non-small cell lung cancer (NSCLC), advanced NSCLC and extensive-stage small cell lung cancer (ES-SCLC).
- Elezanumab for the treatment of spinal cord injury: assessing the clinical development journey to date.
Microbiology
- The effects of cold temperature on the development, microbiome, and transcriptome of the sea anemone Nematostella vectensis.
- Acid sphingomyelinase is an age-dependent host cell factor for adenovirus entry and a pharmacological target for synergistic combination therapy with brincidofovir.
- Unlocking the biotechnological potential of traditional fermented food microbiomes.
- Crop domestication, selective breeding, and the seed microbiome: a call for further research.
- Leaf Rust in Rye: From Pathogen Biology to Host Defence and Resistance Breeding.
- RIN4 fragments released by AvrRpt2 promote NDR1-dependent activation of RPS2.
- Proactive Surveillance of Public Swimming Pools to Prevent Delayed Detection of Cryptosporidiosis Outbreaks.
- Recurrent urinary tract infections in older adults: A systematic review of current challenges and emerging therapeutic strategies.
- Intracellular structural modifications of natural peptidoglycan fragments preceding NOD2 signaling in mammalian cells.
- Shiga toxin delivery in extracellular vesicles induces high mortality and severe kidney injury in a Gb3-dependent manner.
- Chronic exposure to intestinal parasites and bacterial enteropathogens among children in rural Madagascar: Implications for asymptomatic carriage and co-infections.
- Respiratory and bloodstream coinfections and antimicrobial use in hospitalised patients with moderate to severe COVID-19: An Australian retrospective cohort study.
- Seqwin: ultrafast identification of signature sequences in microbial genomes.
- A novel transformer model of protein domains for viral taxonomy classification.
- Genotype-specific root morphology and metabolic traits shape bacterial communities and tolerance to Fusarium root rot in wheat.
Evolutionary Biology
- A conceptual framework to dissect emergent functions in microbial communities.
- Evolution of health-related quality of life after breast cancer surgery: longitudinal follow-up of climacteric symptoms.
- Evolution, hibernation, and inactivation of voltage-gated Na channels.
- Explicit solvation unveils the mechanism of chlorine evolution on RuO(2)(110): an AIMD study.
- From silver nanoparticles to nanoclusters: enhanced oxygen evolution electrocatalysis through size reduction.
- Machine-Learning-Enabled Rapid Evolution of Photoenzymes for the Asymmetric Synthesis of gem-Difluorophosphonates.
- Transcriptome mining and comparative genomics reveal 36 putative novel marafivirus species and conserved evolution of the marafibox regulatory element.
- Tachycardia-induced cardiomyopathy: evolution of the concept and contemporary insights.
- Clonal evolution of mycosis fungoides into peripheral T-cell lymphoma: evidence from next-generation sequencing in two cases.
- 60 years of ARDS and the evolution of extracorporeal lung support - from ECMO to ECCO(2)R.
- Evolution of CTCF binding sites in the human genome.
- Recent plastid replacement in Karlodinium ballantinum (Kareniaceae, Dinoflagellata) challenges the paradigms of endosymbiotic gene transfer.
- Low electronegativity-induced high-entropy engineering of (NiCoFeMnCr)(3)S(4) for an efficient oxygen evolution reaction.
- A case of budding speciation in the California Floristic Province and infraspecific divergence in Abronia villosa.
- Enhanced Hydrogen Evolution over Single-Atom Catalysts via Electrostatic Polarization in Contact-electro-catalysis.
Molecular Ecology
- Disturbance-driven trait shifts in croplands alter the trophic structure of tropical ant assemblages.
- Morphology and phylogeny of Avicennia marina (Forssk.) Vierh. in Iran.
- Disentangling Environmental Variability and Mining Disturbance: A Five-year Assessment of Mammal Community Responses to Open-pit Expansion in a Semi-arid Landscape.
- A case of budding speciation in the California Floristic Province and infraspecific divergence in Abronia villosa.
- A comprehensive reference genome assembly dataset of birds inhabiting Denmark, Greenland, and the Faroe Islands.
- Linking fluvial barriers and habitat specialization in the evolution of microendemism in riverine fishes.
- DNA barcoding uncovers two putative new species in Trachelyopterus (Siluriformes: Auchenipteridae).
- Shaped by Mountains, Driven by Climate: The Rise of the Neotropical Carex sect. Fecundae.
- Quantifying avian resilience to habitat change to support conservation decision-making.
- Environmental injustice in the West Bank: a mixed-methods assessment using SDG-based indicators.
- A self-attention-based deep learning model for identifying key genes in insect pupal metamorphosis.
- A Review of Environmental DNA (eDNA)-Based Detection of Aquatic Denizens and Water‑Borne Pathogens in Wetlands: Recent Trends and Future Perspectives.
- Surprising cryptic cavefish diversity in a long-studied karst cave ecosystem of northern Alabama.
- Observed core-to-transition biodiversity gradient may be a statistical artefact.
- Reply to: Observed core-to-transition biodiversity gradient may be a statistical artefact.
arXiv Physics
- PDF Calibration of systematic distortions in quantum emitter localization microscopy for deterministic nanophotonic fabrication
- PDF Data-driven atomistic modelling of hybrid halide perovskite passivation
- PDF Energetic Protection, Monotonicity and Switching Far from Equilibrium
- PDF The steady incompressible ideal free-boundary flows of a hydromagnetic star
- PDF Phase-field modeling of elastically driven abnormal grain growth
- PDF Trigger system for the Payload for Ultrahigh Energy Observations (PUEO) balloon-borne neutrino detector
- PDF Photon-conserving Raman soliton attractors in focusing and defocusing Kerr media
- PDF Swimming-limited aggregation of bacteria in liquid crystals
- PDF Fast Pulses for High-Fidelity Circularization of Interacting Rydberg atoms
- PDF The Recurrent Nova TCrB: A Method for Predicting the Next Eruptive Event in Nova Cycles
- PDF cQED-iCIPT2: A Near-Exact Method for Polaritonic Chemistry
- PDF Semi-Markovian switching in a fluctuating harmonic trap: An age-structured formulation
- PDF Biophysics of the Pyrenoid
- PDF Torsional selection rule for the spin--orbit conversion of light
- PDF Measurement of the effect of member performances on team outcomes in two-stage exams
arXiv Mathematics
- PDF Sharp ratios for low-index Neumann eigenvalues on convex domains
- PDF Well-invertible column subsets of sparse matrices are rare
- PDF Focused Width in Adversarial Fake Detection: A Separation
- PDF The Minkowski grid has robustly many repeated distances
- PDF An Analytical Newsvendor Framework for Risk-Averse Energy Storage Capacity Reservation under Non-Normal Uncertainty
- PDF Depth profile of depth-weighted trees with bounded weights
- PDF Rerouting Curves on Surfaces
- PDF Noncommutative Cartier Formulae
- PDF On a complete characterization of path-free complexes associated with complete multipartite graphs
- PDF An improved lower bound for odd integers not of the form $p+2^a+2^b$
- PDF The microscopic weighting on a metric space
- PDF The local product condition implies cutoff
- PDF A note on stability conditions on projective spaces
- PDF Universal affine bundles for compact complex manifolds
- PDF A universal discriminant formula for pencils of quadrics
arXiv Computer Science
- PDF From Fixed to Free Cameras: Calibration-Free View-Robust Vision-Language-Action Model
- PDF Weak-to-Strong Generalization via Direct On-Policy Distillation
- PDF Interpretable Human-Label-Free Deep Learning for Real-Bogus Classification with Uncertainty Quantification
- PDF SynCity 3000: Bootstrapping Scene-Scale 3D Diffusion
- PDF LLM-as-a-Verifier: A General-Purpose Verification Framework
- PDF Deform360: A Massive Multi-view Visuotactile Dataset for Deformable World Models
- PDF InFlux++: Real and Synthetic Data for Estimating Dynamic Camera Intrinsics
- PDF CATs: Secure Blockchain Interoperability with Cross-chain Atomic Transactions
- PDF Abstract Color Voronoi Diagrams and Circular Sequences of Color Permutations
- PDF Search Beyond What Can Be Taught: Evolving the Knowledge Boundary in Agentic Visual Generation
- PDF What Does a Discrete Diffusion Model Learn?
- PDF TabPack: Efficient Hyperparameter Ensembles for Tabular Deep Learning
- PDF CompactionRL: Reinforcement Learning with Context Compaction for Long-Horizon Agents
- PDF Cortex: A Bidirectionally Aligned Embodied Agent Framework for Long-horizon Manipulation
- PDF MV-Forcing: Long Multi-View Video Generation via 4D-Grounded Spatio-Temporal Self-Forcing
arXiv Quantitative Biology
- PDF Geometric Causal Models
- PDF Rethinking Benchmarks and Models for Enzyme Specificity Prediction
- PDF Data-Driven Soft Labeling Scales DNA Read Classification to Whole-Body Cell-Type Deconvolution
- PDF Parenclitic hypergraphs and their application in personalized cancer therapy
- PDF Disguised complex balance via positive algebraic geometry
- PDF Score Distributions, Not Cells: Evaluating Single-Cell Perturbations Under Class Overlap
- PDF Predicting Therapeutic Outcome via Aligning Patient-Specific Knowledge Graph and Gene-Level Perturbation Representations
- PDF Causal ASCEND: Scalable Two-tier Causal Discovery on High Dimensional Multi-omics Data
- PDF Beyond DSA: Conjugacy-based Comparison of Dynamical Systems
- PDF Mathematical Model of Evolution of Non-Degenerate Replicator Systems
- PDF Diffusion bridge with randomized initial and terminal times and its application to fish migration
- PDF Biological Motifs for Agentic Control
- PDF A loser in both environments can survive by switching between them
- PDF A Collision-based strategy for Network-free Exploration of Complex Molecular Networks
- PDF Spectral Diffusion for Protein Dynamics
arXiv Quantitative Finance
- PDF Causal Separation, Conditional Risk, and Projected Markowitz Portfolios
- PDF Forecasting Realized Volatility with Time Series Foundation Models: A Comparison with Econometric Benchmarks
- PDF Square-Root Price Impact Is Necessary for Endogenous Manipulation Cycles in Learning-Agent Markets
- PDF Any Axes Are Allowed: A Characteristic-Axis Integral Diagnosis of Factor Models
- PDF Reaction-boundary variance and adjoint-consistent local-volatility projection
- PDF Look-Ahead-Freedom as Temporal Non-Interference: A Verifiable Correctness Property for Backtesting and Agentic Trading Pipelines
- PDF Renewing Reliability: Valuation and Credit Risk Adjustments for Renewable Power Purchase Agreements
- PDF Adapted Law Invariance and Time-Consistent Dynamic Risk Measures
- PDF Preference-fitting Framework: Elicited Utility Function and PHARA Approximation
- PDF Order Splitting and Liquidity Replenishment Are Jointly Necessary for the Square-Root Law of Market Impact:
- PDF Deep Learning for Dynamic Programming with Recursive Utility
- PDF A Limit Order Market with Uncertain Informed Trading Participation
- PDF A Gabor--Epps uncertainty principle for traders
- PDF Governing Generative AI Across Financial Institutions: An SR 26-2-Compatible Framework for Generative AI Risk Control
- PDF Local Gaussian Correlation in the Tails: A Scarcity Diagnostic, an Optimal Local Bandwidth, and the Limits of Adaptivity