Protein Data Bank
- 3D 10DQ: Cbf1-CCAN-CEN complex
- 3D 10FI: apo CCAN purified from budding yeast
- 3D 10JC: CCAN dimer purified from budding yeast
- 3D 10KU: Structure of hNSP4-S218A bound to MCP3 at 2.09 A resolution
- 3D 10KV: Structure of hNSP4 bound to MCP4 at 2.75 A resolution
- 3D 10OH: Structure of Clostridium difficile Toxin B (TcdB) glucosyltransferase in complex with UDP and isofagomine analog 2-4
- 3D 10OI: Structure of Clostridium difficile Toxin B (TcdB) glucosyltransferase in complex with UDP linked isofagomine analog 3-5
- 3D 10QV: Crystal Structure of NQO1 Complexed with S-Warfarin
- 3D 11GY: Crystal structure of selective inhibitor 16 bound at the active site of CDK1
- 3D 11ZT: Kindlin-3/Integrin Beta2 Cytoplasmic Tail Complex
PDB Nitrogen Cycle
- 3D 10QV: Crystal Structure of NQO1 Complexed with S-Warfarin
- 3D 20YY: Cryo-EM structure of MexJK from Pseudomonas aeruginosa
- 3D 29TJ: Structure of the Porcine Reproductive and Respiratory Syndrome virus-2 glycoprotein GP4 antigenic region 59-69 bound to the neutralizing scFv#18
- 3D 9L94: State G of archaeal pre-50S ribosome
- 3D 9L98: State C of archaeal pre-50S ribosome
- 3D 9L9K: State E of archaeal pre-50S ribosome
- 3D 9R9M: Crystal Structure of human MLH1 C-terminal domain with cyclic peptide (2S)-N-[(6S,9S,12S,15S,18S,26aR)-12-(4-aminobutyl)-18-benzyl-21-(2-carbamoyle...
- 3D 9RRK: Hen egg-white lysozyme (HEWL) collected at the European XFEL, SPB/SFX at the Interaction Region Downstream with 9.6 keV photon energy
- 3D 9VML: Structure of Trypanothione Reductase from Leishmania donovani
- 3D 9VP9: GH64 family beta-1,3-glucanase from Massilia violaceinigra in complex with a glucose disaccharide
PDB Photosynthesis
- 3D 10QV: Crystal Structure of NQO1 Complexed with S-Warfarin
- 3D 9L94: State G of archaeal pre-50S ribosome
- 3D 9L95: State F of archaeal pre-50S ribosome
- 3D 9L96: State D of archaeal pre-50S ribosome
- 3D 9L98: State C of archaeal pre-50S ribosome
- 3D 9L9J: State H of archaeal pre-50S ribosome
- 3D 9L9K: State E of archaeal pre-50S ribosome
- 3D 9L9V: State A of archaeal pre-50S ribosome
- 3D 9S6P: Local refinement of a PSI monomer of A. marina NIES-2412
- 3D 9SK3: Trimeric photosystem I of Acaryochloris marina NIES-2412
PDB PFAS Degradation
- 3D 21DT: X-ray structure of the Haloalkane dehalogenase HaloTag7 labeled with BD566-HTL substrate
- 3D 9HLN: Crystal structure of MnmA D100C mutant from Streptococcus pneumoniae with [4Fe-4S] cluster in complex with formate
- 3D 9RFP: Peptidedeformylase XisD in complex with formiate
- 3D 9Q1E: Cryo-EM Structure of the MgtA Tetramer at 2.7 A Resolution
- 3D 9Q6O: Cryo-EM Structure of MgtA in the E2-P State at 2.7 A Resolution
- 3D 9VBQ: Crystal structure of FXR in complex with agonist XJ02862-S2
- 3D 9VBR: Farnesoid X Receptor Agonists_FXR fused with a HD3 peptide
- 3D 9ZLK: Cryo-EM structure of MgtA with bound AMPPCP and magnesium
- 3D 24UU: Crystal structure of Endonuclease IV from Chlamydophila pneumoniae
- 3D 9Z11: Crystal Structure of the Poly(Hexamethylene Adipamide) (Nylon66) Hydrolase Nyl50 in Complex with Butyrate at Room Temperature
Project Gutenberg
- A Christmas Carol EPUB PDF
- Crime and Punishment EPUB PDF
- Anne of Green Gables EPUB PDF
- The Secret Garden EPUB PDF
- Adventures of Huckleberry Finn EPUB PDF
- The Divine Comedy EPUB PDF
- The Importance of Being Earnest EPUB PDF
- Aesop's Fables EPUB PDF
- Thus Spake Zarathustra EPUB PDF
- Sense and Sensibility EPUB PDF
- The Scarlet Pimpernel EPUB PDF
- Dracula EPUB PDF
- Les Miserables EPUB PDF
- Moby Dick EPUB PDF
- The Secret Garden EPUB PDF
GitHub bioRxiv
-
OlmLab/ZipStrain
12
Python
Official Repository for ZipStrain python package
-
lnccbrown/HSSM
117
Python
Development of HSSM package
-
Eldergenix/Plato-Scientific-Research-Autonomous-Agent
76
Python
Multi-agent AI scientist that turns experimental data into > publication-ready r...
-
JSONbored/awesome-claude
281
MDX
HeyClaude is a curated registry and distribution surface for Claude and AI-workf...
-
bhgtiger/StructAgent
11
Python
StructAgent software release archive
-
rcedgar/reseek
83
C++
Protein structure alignment and search algorithm
-
ziwenhahaha/daily-paper-reader
807
Python
开源的每日 arXiv / OpenReview 论文推荐与 AI 阅读平台，支持 GitHub Actions 自动更新、GitHub Pages 部署与论文...
-
MGXlab/Jaeger
10
Python
Jaeger is a quick and precise tool for detecting phages in sequence assemblies.
-
Yasas1994/Jaeger
37
Python
Jaeger is a quick and precise tool for detecting phages in sequence assemblies.
-
anthropics/knowledge-work-plugins
22554
Python
Open source repository of plugins primarily intended for knowledge workers to us...
Synthetic Biology
- Challenges and Future Directives of Synthetic Biology in Engineering Plant-Microbe Partnerships for Sustainable Agriculture.
- Enhancing the Secretion Systems: Genetic Engineering of Super Bioagents for Effective Plant Disease Control.
- Bone transcriptomics reveals that juzentaihoto remodels and activates multiple pathways in Klotho-deficient mice.
- Astragaloside IV Alleviates Osteoarthritis by Upregulating ETS2: A Bioinformatics and Experimental Study.
- Impact of carbon and nitrogen source variation on B-vitamin accumulation in Yarrowia lipolytica: Toward microbial fortification of food ingredients.
- Draft genome data of Fusarium proliferatum TQN5T isolated from Dysosma versipellis.
- Bridging ecological processes to elevated antibiotic resistance risk in tomato microbiome under fungicide stress.
- An advanced genome engineering platform for Komagataella phaffii enabling versatile in vivo DNA assembly and multiplex integration.
- Genome-wide characterization of the glutathione S-transferase gene family identifies GmGSTF8 and GmGSTF11 as anthocyanin-associated GSTs in soybean.
- Sustainable gold nanoparticles using Jania rubens, targeted therapeutic potential in prostate cancer and mechanistic insights via GO/KEGG pathway analysis.
- Integrative Transcriptomic and Functional Analysis Reveals Fatty Acyl Elongases Involved in Sex Pheromone Biosynthesis in Rice Leaffolder, Cnaphalocrocis medinalis (Lepidoptera: Pyraloidea).
- High-titer retinal production in Yarrowia lipolytica via redox engineering coupled with intra- and extracellular sequestration.
- Pathways and functional enzyme-mediated mechanisms of tetracycline biodegradation by the marine microalgae Phaeodactylum tricornutum.
- The UL31 protein of duck plague virus promotes viral replication and interacts with ICP4, ICP22, and VP16 proteins.
- Endothelial cytochrome P450 -derived cholesterol limits angiogenesis.
Biotechnology
- Enhancing the Secretion Systems: Genetic Engineering of Super Bioagents for Effective Plant Disease Control.
- Critical Review on Microbial Inulinase Production: Emerging Strategies, AI-Driven Optimization, and Applications.
- Phase I/II Study of NGGT001 Gene Therapy for Bietti Crystalline Dystrophy.
- Next generation AAV-F capsid gene therapy rescues disease pathology in a model of pyruvate dehydrogenase complex deficiency.
- Antimetabolites synergize with non-genotoxic antibody drug conjugate conditioning in hematopoietic stem cell lentiviral gene therapy.
- Combining modeling approaches for rapid preclinical evaluation of retinal gene therapy.
- Gene therapy induces synaptic ribbon maturation, synaptogenesis and vision recovery in an adult dog model of retinal degeneration.
- AAV-norrin gene therapy rescues retinal defects in mice with Norrie disease and oxygen-induced retinopathy.
- Rapamycin nanoparticles mitigate anti-AAV antibody formation in a mouse model of ornithine transcarbamylase deficiency.
- BAG3 gene therapy emerges as a potential treatment for myofibrillar myopathies.
- INHBA secreted by cancer-associated fibroblasts promotes cisplatin resistance and malignant progression of ovarian cancer via ENG-mediated suppression of apoptosis and induction of EMT.
- Modification of PCNA by ISG15 plays a crucial role in porcine deltacoronavirus infection.
- An advanced genome engineering platform for Komagataella phaffii enabling versatile in vivo DNA assembly and multiplex integration.
- Whole genome sequence-based comparative genomics reveals preliminary genomic features of Salmonella enterica subsp. enterica serovar Enteritidis phage type 1 and phage type 4 strains from EnteroBase.
- A FtsH-Like Zinc Metalloprotease, OsFtsH1, Coordinates Chloroplast Development and Photosystem II Homeostasis in Rice.
AI & Machine Learning
- Non-destructive prediction of lead content in oilseed rape leaves by fluorescence hyperspectral technology based on neural network.
- Spatiotemporal dynamics of PFAS ecological risk in major Chinese river networks: a data-driven assessment (2011-2024).
- Unveiling nonlinear drivers of ecosystem service bundles and dynamic buffer zones for precise watershed governance: A coupling framework of SOM and XGBoost-SHAP in the Yellow River Basin.
- A dual-scale framework for understanding ecosystem service patterns, interactions, resistance, and multifunctionality on the Qinghai-Tibet Plateau: implications for adaptive management.
- Applications and Material Design of Machine Learning-Enabled Metal Oxide Semiconductor Gas Sensors.
- Machine Learning-Based PAT Tool for Real-Time Residual Moisture Monitoring in Lyophilized Biopharmaceuticals Using NIR Spectroscopy.
- Prompt Framing and Evidence Requirements for AI-Generated Educational Responses in Dental Education: An Experimental Study.
- Critical Review on Microbial Inulinase Production: Emerging Strategies, AI-Driven Optimization, and Applications.
- Bioinspired synthetic strategies for enhanced cell membrane interactions for targeted delivery of biomacromolecules.
- Machine-learning modeling of temperature-dependent optoelectronic properties of anharmonic solid solutions.
- Clever materials: when models identify good materials for the wrong reasons.
- MRDsteer: quality-aware AI-driven closed-loop optimization enhances ctDNA-based minimal residual disease detection.
- Topological deep learning for drug-target interaction, virtual screening, and docking scoring: a practical, benchmark-driven review.
- Deep learning models for cell cycle phase prediction from single-cell RNA sequencing data.
- Chemical Knowledge as Compression: Why Chemistry Still Needs Chemists in the Age of AI.
Neuroscience
- Consensus definition and assessment of trunk control in children and adolescents with neurological conditions.
- [Fitness to drive: legal context and new opportunities for cognitive assessment].
- Commentary on "Inter-Brain Correlates of Coparenting during the Lausanne Trilogue Play": Anchoring Interpersonal Neural Synchrony in Established Interactional Research.
- Coffee intervention alleviates anxiety-like behavior and metabolic dysfunction induced by a high-fat diet combined with sleep deprivation in mice: a multi-omics analysis of alterations associated with the gut-liver-brain axis.
- Transcutaneous auricular vagus nerve stimulation during a 3-back task: a high-density functional near-infrared spectroscopy study.
- Brain clearance physiology in traumatic brain injury: From disruption to therapeutic potential.
- The impact of adverse childhood experiences on functional recovery following traumatic brain injury-related rehabilitation in veterans.
- Regulation of AQP4 Expression and Investigation of the Underlying Mechanisms by HIV-1 Tat Through the NMDAR/cAMP/PKA Signaling Pathway in Astrocytes.
- Resting-State fMRI Co-Activation Patterns Reveal Multiscale Brain Functional Alterations in Primary Angle-Closure Glaucoma: Transcriptomic, Cellular, Neurochemical, and Machine-Learning Signatures.
- Enhanced measures to quantify gait and balance impairment in degenerative cervical myelopathy: A prospective cohort study.
- Curcumin relieves gas explosion-induced brain injury via TLR4-mediated M2 polarization of microglia.
- Economic burden of adult mild traumatic brain injury in the United States: a scoping review of healthcare-related charges and costs.
- Cranial Neuropathies Associated With Pediatric Brain Tumors: Evaluation of Pediatric Otolaryngology Referral Patterns and Interventions.
- Bilateral Gustatory Disturbance Associated With Unilateral Putaminal Hemorrhage: A Case Report and Literature Review.
- Todd's Paralysis Simulating Acute Ischemic Stroke: A Case Report.
Climate Science
- Population Collapse of the Spidery Wattle (Acacia araneosa) During Late Holocene Aridification: Genomic Evidence for Critically Endangered Status.
- Predicting the Habitat Suitability for Endangered Tree Species Pterocarpus marsupium in Nepal, Using Ensemble Species Distribution Models.
- Coupled biogenic and soil emissions amplify heatwave-driven secondary pollution.
- Anthropogenic disturbance decouples coastal soil organic carbon and bulk density.
- Greenhouse gas emissions in natural and degraded tropical peatlands.
- Heat stress exposure and incidence of chronic kidney disease.
- Phytoplankton dominance alters basal energy pathways and food web structure in eutrophic shallow lakes.
- Pan-European maps and models of current and future tree species distributions and their growth potential.
- Genetic Analysis Reveals Climate Exposure and Conservation Opportunities for a Vulnerable Life History in Steelhead (Oncorhynchus mykiss).
- Attributing heatwave mortality to human-induced climate change in Greece: a case-crossover and attribution analysis for 2000-2019.
- Green Areas, Environmental Index, and Arbovirus Transmission Under Climate Change in Brazil.
- Optimizing agricultural inputs to enhance sustainability by reducing energy use and greenhouse gas emissions.
- Low salinity and weak hypoxia interactively amplify N(2)O production in nitrogen-enriched estuarine ecosystems.
- Breaking the ice for a low-carbon consumption transition in developing countries: The role of digital literacy.
- A land-sea coupled framework for revealing hierarchical drivers of mangrove dynamics.
Medicine
- Sulfonylureas beyond diabetes: A comprehensive review on anticancer and off-target effects (1956-2025).
- Assessment of body composition in severe obesity: agreement between multifrequency bioelectrical impedance analysis and DXA and contribution of raw impedance data.
- The gut-sleep connection: a scoping review into microbiome alterations in sleep-wake and circadian disorders.
- Assessment of treatment response in recurrent medulloblastoma using craniospinal MRI.
- Activation of TRPV4 promotes transepithelial K+ secretion in rat vaginal epithelium.
- AbTune: layer-wise selective fine-tuning of protein language models for antibodies.
- Outcomes of Talimogene Laherparepvec in Soft Tissue Sarcoma.
- Preclinical safety evaluation of subconjunctival methotrexate in the rabbit model.
- Clinicopathologic Evaluation of Amyloid Clearance in Alzheimer Disease.
- [Acceleration of postoperative macular edema recovery with hyperbaric oxygen therapy].
- [Assessment of the effects of ornithotherapy in psychiatric patients with intellectual disabilities].
- Treatment inequity among older adults with newly diagnosed acute myeloid leukemia ineligible for intensive therapy.
- Rapid Access to Photoswitchable RNA Binders: Fluorination Enhances Protein Rescue by Exon Inclusion.
- Integrated bulk and single-cell transcriptomic analysis reveals the impact of lactate-related genes on prognosis and immune characteristics in HNSCC.
- Daucosterol linoleate from sweet potato inhibits breast cancer metastasis via SCD1 downregulation and suppression of epithelial-mesenchymal transition.
Genomics
- Current Evidence for Circulating Tumor DNA in Sarcoma: Challenges and Opportunities for Clinical Application.
- Decoding preeclampsia: A fusion of multi-view machine learning and multi-omics to identify putative inflammation-related mechanisms.
- Resting-State fMRI Co-Activation Patterns Reveal Multiscale Brain Functional Alterations in Primary Angle-Closure Glaucoma: Transcriptomic, Cellular, Neurochemical, and Machine-Learning Signatures.
- Bone transcriptomics reveals that juzentaihoto remodels and activates multiple pathways in Klotho-deficient mice.
- The evolution of diagnostic microbiology: integrating culture-based methods and genomic advances.
- Tensor network-based gene regulatory network inference for single-cell transcriptomic data.
- Exploration and experimental validation of oxidative stress-related diagnostic genes in interstitial cystitis based on transcriptomics.
- TLNRD1-CCM2 interaction maintains endothelial actin networks through a KLF2/4-independent mechanism.
- CYP4B1 Expression in Breast Cancer: An Immunohistochemical Study with Complementary in silico Analyses.
- Detection, virus isolation, and phylogenetic analysis of PRRSV2 in China from 2022 to 2025.
- The MAPK/ATF3/ASNS axis drives amino acid metabolic reprogramming to promote NSCLC survival under glucose deprivation.
- Integrative single-cell and spatial transcriptomic analysis reveals a lactate-driven crosstalk between NFATc4⁺ tumor cells and SPP1⁺ macrophages in glioblastoma.
- Divergent mitochondrial and fibrotic signatures in atrial fibrillation: insights from organoids and GEO data.
- Single-cell RNA sequencing and cross-species analysis revealed the role of T cell-driven inflammatory responses in the pathogenesis of aortic dissection.
- Comparative plastome analyses of Lewinskya (Orthotrichaceae): insights into genome structure, molecular evolution, and phylogenetic relationships.
Immunology
- AbTune: layer-wise selective fine-tuning of protein language models for antibodies.
- Update on Selected Adverse Events of Concern Following Immunization With Acellular Pertussis Vaccines, a Narrative Review.
- Efficacy of an Inactivated Bacterin Vaccine Against Emerging Streptococcus dysgalactiae in Channel Catfish (Ictalurus punctatus).
- Decalogue of the Declaration of Salamanca: Advancing Undergraduate Education in Allergy and Clinical Immunology Across Europe.
- Clinical Manifestations and Genetic Findings in Three Patients with Chediak-Higashi Syndrome: Highlighting the Splice Site Variants.
- Immunomodulatory Effects of Bacterial Lysates Combined with Bronchoalveolar Lavage on Cytokine Regulation and T-cell Responses in Pseudomonas aeruginosa-colonized Bronchiectasis.
- Role of Mannose-binding Lectin-2 Promoter Genetic Variants in Susceptibility to Sepsis: A Meta and Trial Sequential Analysis.
- Advances in ex vivo mRNA-based gene transfer for cell-based cancer immunotherapy.
- Phase III Trials in India: A Comprehensive Analysis of the Clinical Trials Registry-India.
- School-associated measles outbreak driven by vaccination gaps, sociocultural barriers, and delayed detection in Gomba District, Uganda 2025.
- Correlation between Antiretinal Antibodies and OCT Manifestations in Nonparaneoplastic Autoimmune Retinopathy.
- BCG in the fight against cancer: exploring its applications in diverse tumour types and future directions.
- S100A8/S100A9 Links Diabetic Stress to Cardiac Progenitor Cell Dysfunction and Fibrotic Heart Failure: An Integrated Transcriptomic, Single-Cell, and Functional Study.
- Non-syndromic elevated IgE.
- Pregnancy in a woman with Bombay blood group.
Microbiology
- The gut-sleep connection: a scoping review into microbiome alterations in sleep-wake and circadian disorders.
- Performance and toxicity reduction in Colocasia esculenta (Taro plant) assisted baffled subsurface flow constructed wetland treating swine wastewater.
- Enhancing the Secretion Systems: Genetic Engineering of Super Bioagents for Effective Plant Disease Control.
- [Two distinguished professors' contribution to the development of Swiss public health and microbiology who were born at the end of the 19th century in Hungary].
- Efficacy of an Inactivated Bacterin Vaccine Against Emerging Streptococcus dysgalactiae in Channel Catfish (Ictalurus punctatus).
- Molecular characterization of virulence and resistance determinants in clinical Pseudomonas aeruginosa isolates: a cross-sectional analysis of virulence-resistance associations.
- Vancomycin-stressed Staphylococcus aureus extracellular vesicles hijack macrophage autophagy to enhance bacterial intracellular survival.
- Physiological and Skin Microbiome Divergence Among Closely Related Anurans Co-Occurring in Agricultural Wetlands.
- Nocardia brasiliensis infection causes skin abscesses around the eyes: A case-report and review of literature.
- Evidencing strain-dependency of metabolic pathways within 1,494 lactic bacteria genomes with the in silico screening Prolipipe pipeline.
- The evolution of diagnostic microbiology: integrating culture-based methods and genomic advances.
- Disturbance intensity shapes universal and context-dependent functional traits in anaerobic microbiomes.
- Generation of apical-out nasal organoids to facilitate human respiratory syncytial virus infection and drug screening.
- Phylogenetic and Functional Analysis of β-Glucanases in Tannerella forsythia Reveals Distinct GH16 Family Glycoside Hydrolase Lineages in Oral Bacteria.
- Orally administered biomimetic nanovesicles engineered with FGF2 orchestrate mucosal healing and microbiome remodeling in inflammatory bowel disease.
Evolutionary Biology
- Role of Co ion in ionic covalent organic networks for boosting the electrocatalytic oxygen evolution reaction.
- The evolution of diagnostic microbiology: integrating culture-based methods and genomic advances.
- Geomorphic characteristics and basin evolution of the river basin in southern India: A morphometric perspective.
- Structural evolution and prebiotic-like potential of insoluble dietary fiber-polyphenol complexes from Rosa roxburghii Tratt during in vitro digestion and colonic fermentation.
- A systematic map of generative AI guidelines and reporting in ecology and evolutionary biology: towards the framework of AI disclosure for Improved Transparency (AIdIT).
- Comparative plastome analyses of Lewinskya (Orthotrichaceae): insights into genome structure, molecular evolution, and phylogenetic relationships.
- Revealing hidden diversity in gonostomatid ciliates (Ciliophora, Hypotrichia): integrative evidence supports two new species, a new genus, and Wallackiidae fam. nov.
- Insertion sequence elements associated with Staphylococcus epidermidis evolution in persistent orthopaedic device-related infections.
- Evolutionary history of LRRK2 and PRKN in leprosy and Parkinson's disease.
- Associations of trabecular bone texture with anatomical phases of osteoarthritis evolution and its progression in finger joints: Results from the Nor-Hand study.
- Cyclin-dependent kinases as signaling integrators in cancer: Structural evolution, functional plasticity, and drug discovery.
- Evolution of direct and indirect costs of rheumatoid arthritis and related conditions in France: a 2015-2023 nation-wide population-based study.
- Within-host evolution of tandemly duplicated bla(KPC14) conferring cross-resistance to ceftazidime-avibactam, cefiderocol and aztreonam-avibactam in hypervirulent ST11 Klebsiella pneumoniae.
- Light, melanin, and the microbial clock: Rewiring the gut-brain-skin axis.
- Simultaneous tuning of the chemical bond rearrangement and interfacial water network reconstruction at iron-doped phosphide/nitride heterostructure for high efficiency hydrogen evolution reaction.
Molecular Ecology
- Impact of Environmental Microparticles on Insect Olfaction.
- How similar are species names and why does this matter for biodiversity data.
- Diversity and Spatiotemporal Activity Patterns of Medium and Large Mammals in the Niokolo-Koba National Park, Senegal.
- Population Collapse of the Spidery Wattle (Acacia araneosa) During Late Holocene Aridification: Genomic Evidence for Critically Endangered Status.
- Bridging biodiversity gaps: Updated taxonomy and diversity of Sri Lankan Myllocerus (Coleoptera, Curculionidae, Entiminae).
- Diversity persists while function shifts: post-heatwave reorganization of reef fish communities in Baja California.
- Two new species and one new record of Perennicordyceps (Polycephalomycetaceae, Hypocreales) from China.
- MSAIRHD: Mainland Southeast Asia International River Upper Reach Hydrological Dataset, 1958-1987.
- Nitrogen fixation rates increase with diazotroph richness in the global ocean.
- Effluents from a Mexican reservoir: A toxicity mosaic inducing teratogenesis and neurobehavioral effects in Xenopus laevis.
- Climate Change Projected to Increase Rates of Background Tree Mortality Across Eastern North America.
- Deep fused explainable neural architecture for the automatic recognition of therapeutic medicinal plants.
- Deterministic selection and compositional turnover in Parkinson's disease-associated gut dysbiosis.
- Editorial: Harnessing aquatic microbial symbioses for sustainable aquaculture: unveiling biodiversity and ecosystem dynamics.
- Integrating Water Column and Sediment eDNA Metabarcoding Reveals Seasonal Turnover and Habitat-Specific Differentiation of Fish Communities in a Subtropical Coastal Bay.
arXiv Physics
- PDF Optimal-Transport-Based Cell Resampling for Negative and Pathological Event Weights
- PDF Asymmetric high-harmonic generation from subwavelength bianisotropic resonators
- PDF Detection of the Polycyclic Aromatic Hydrocarbon Phenalene (C$_{13}$H$_{10}$) in the Very Low Luminosity Object (VeLLO) MC27/L1521F
- PDF Dynastic dynamics: Modelling powerful naming choices with stochastic prestige
- PDF Low-latency FPGA-based electronic control system for fast preparation of defect-free atom arrays
- PDF Precision mapping of laser-driven magnetic fields and their evolution in high-energy-density plasmas
- PDF Drift of interfaces in forced stably-stratified turbulence and the role of vertically-sheared helical structures
- PDF Inverse Transfer and Coherence in Rotating Stratified Flow with Clouds and Phase Transitions
- PDF Statistical inference of dynamical processes on networks
- PDF Microwave Studies of Single Crystal TeO2 at Cryogenic Temperatures
- PDF Acceleration-based clustering reveals frequent gait switching in sprint sled dogs
- PDF A Novel Hadronic Calorimeter With A Direct Neutron Readout
- PDF Intracellular luminescence thermometry: A story of disagreement, trust, and hope
- PDF Manifold-adapted radial basis functions for reduced-order modelling of chaotic flows
- PDF Broadband silicon photonic phase shifters driven by gradient optical forces
arXiv Mathematics
- PDF One-cusped Dehn fillings of the sisters of the Whitehead and $6^2_2$ link complements
- PDF Hockey stick $f$-divergences
- PDF Score Accuracy Along the Forward Diffusion Does Not Certify Numerical Stability in Diffusion Sampling
- PDF Finding Simple Proofs for First-Order Optimization
- PDF Decoupling Limit of Quiver Theories and the Angular Spectra of Extreme C-metrics
- PDF A Matrix Analogue of Rational Number Systems
- PDF Modal logics of conjunctively closed provability predicates
- PDF A functional inequality related to Domar's uniform boundedness theorem
- PDF Gilbreath's conjecture: a Cramér random model and a deterministic analysis
- PDF $K$-spherical horospherical averages on the Nagao quotient: tree combinatorics and exact discrepancy
- PDF Spectrum of Directed Inhomogeneous Random Graphs
- PDF Some properties of high-order nonstandard multistep multistage methods
- PDF A Short Proof of Optimal Regularity for minimizers of the Alt-Phillips Problem
- PDF Twofold universality of large-$N$ melonic random tensors
- PDF Low-Rank Matrix Recovery via Heavy-Tailed Quadratic Sampling
arXiv Computer Science
- PDF Wat3R: Underwater 3D Geometry Learning without Annotations
- PDF ZipDepth: Bringing Lightweight Zero-Shot Monocular Depth Anywhere, on Any Device
- PDF LongE2V: Long-Horizon Event-based Video Reconstruction, Prediction, and Frame Interpolation with Video Diffusion Models
- PDF Geometry and Gradient-based Partitioning for Panoramic Outdoor Reconstruction
- PDF UniClawBench: A Universal Benchmark for Proactive Agents on Real-World Tasks
- PDF OPSD-V: On-Policy Self-Distillation for Post-Training Few-Step Autoregressive Video Generators
- PDF Enhancing In-context Panoramic Generation via Geometric-aware Pretraining
- PDF OpenCoF: Learning to Reason Through Video Generation
- PDF Hockey stick $f$-divergences
- PDF Ideas Have Genomes: Benchmarking Scientific Lineage Reasoning and Lineage-Grounded Idea Generation
- PDF Score Accuracy Along the Forward Diffusion Does Not Certify Numerical Stability in Diffusion Sampling
- PDF MulTTiPop: A Multitrack Transcription Dataset for Pop Music
- PDF SLORR: Simple and Efficient In-Training Low-Rank Regularization
- PDF DexVerse: A Modular Benchmark for Multi-Task, Multi-Embodiment Dexterous Manipulation
- PDF Using AI-based Learning Assistants in Higher Education: A Large-Scale Descriptive Analysis
arXiv Quantitative Biology
- PDF Contravariance Theory: Strong Alignment for Minimal Solutions to Hard Tasks
- PDF DrugGen 2: A disease-aware language model for enhancing drug discovery
- PDF Impact of Nirsevimab prophylaxis on RSV dynamics: a stage-structured modelling study
- PDF A Non-Hermitian Potential Well Formalism for Conscious--Preconscious--Subliminal Processing
- PDF Anthropogenic disturbance expands the climatic limits of annual plant dominance
- PDF UMA-Inverse: Ligand-Conditioned Protein Inverse Folding with a Distogram-Supervised Dense Pair Encoder
- PDF Rethinking the Choice Behavior of Sugar Metabolism in Bacteria
- PDF A hierarchical memory architecture overcomes context limits in long-horizon multi-agent computational modeling
- PDF Directional bias of a single polarized cell under confinement
- PDF Equivalence testing in pesticide risk assessment -- Evaluation and practical guidance for design, analysis and interpretation
- PDF Collaborate to decorrelate in path space: Hamiltonian replica exchange transition interface sampling (HRETIS)
- PDF Single-Entity Spiking Neuron Models: Survey
- PDF Reliable mechanistic operator recovery with biologically-informed neural networks: principles for architecture and optimisation design
- PDF Bayesian Learning of Distance Metrics Beyond RMSD for Biomolecule Alignment, Clustering, and Domain Identification
- PDF Resource-Efficient Hybrid Quantum Neighborhood Selection for Large-Scale Molecular Diversity Optimization
arXiv Quantitative Finance
- PDF Optimal Prediction of Resistance and Support Levels under Constant Elasticity of Variance Processes
- PDF Stablecoins under Stress in a National Economy: Transaction-Level Evidence from Austrian Crypto-Asset Service Providers
- PDF Estimating the Stochastic Discount Factor from Option Prices and Predicting the Equity Premium
- PDF Grounded Event Extraction from SEC 8-K Filings with a Fine-Grained Taxonomy
- PDF Robustness in Sequential Decision Making under Evolving Uncertainty: Evidence from High-Frequency Market Making
- PDF Volatility in Prediction Markets: A Structural Approach
- PDF Innovating Risk Modelling for Global Funds
- PDF Iterative detection of global factors near the BBP phase transition
- PDF Dynamic Causal Portfolio Choice: Hedging the Rotation of the Common-Driver Manifold
- PDF tsbootstrap: Distribution-Free Uncertainty Quantification and Conformal Prediction for Time Series
- PDF What Useful Alphas?
- PDF Error Propagation in Spectral Functionals of Shrinkage Covariance Estimators: Perturbation Bounds and Calibrated Inference
- PDF Entropic Dynamics of Jump-Diffusion Option Pricing
- PDF Signature-based identification of volatility models from path geometry
- PDF Stable Sentiment and Persistent Dynamics in U.S. Economic News over 45 Years