Protein Data Bank
- 3D 10ME: SemiClosed Eco-ePEC: Cryo-EM structure of Eco RNAP his-elemental paused elongation complex with a semi-closed active site (closed TL and SI3, open ...
- 3D 10MF: CBR9379 bound Open1 Eco-ePEC: Cryo-EM structure of Eco RNAP his-elemental paused elongation complex with an open active site (open TL, SI3 and RH-FL)
- 3D 10MG: CBR9379 bound Open2 Eco-ePEC: Cryo-EM structure of Eco RNAP his-elemental paused elongation complex with an open active site (open TL, SI3 and RH-FL)
- 3D 10MI: Closed Mtb-EC: Cryo-EM structure of Mtb RNAP elongation complex (substrate loading mimic) with a closed active site (closed TL and RH-FL)
- 3D 10MJ: Open Mtb-EC: Cryo-EM structure of Mtb RNAP elongation complex (substrate loading mimic) with an open active site (open TL and RH-FL)
- 3D 10MK: SemiClosed Mtb-EC: Cryo-EM structure of Mtb RNAP elongation complex (substrate loading mimic) with a semiclosed active site (closed TL, open RH-FL)
- 3D 10ML: AAP-SO2 bound Open Mtb-EC: Cryo-EM structure of Mtb RNAP elongation complex (substrate loading mimic) with an open active site (open TL and RH-FL)
- 3D 11FW: Cryo-EM structure of the bacteriophage N4 virion RNA polymerase (open plug state)
- 3D 11GO: Cryo-EM structure of the bacteriophage N4 virion RNA polymerase (transcription initiation complex)
- 3D 11GP: Cryo-EM structure of the bacteriophage N4 virion RNA polymerase (closed plug state)
PDB Nitrogen Cycle
- 3D 21LA: Olep, Cytochrome P450 epoxidase involved in the biosynthesis of murideoxycholic acid (MDCA)
- 3D 24XI: Crystal structure of the diaminopimelate dehydrogenase from Pyrococcus sp. in its holo form
- 3D 27LJ: the structure of cis-isoeugenol synthase AtaIGS1 mutant
- 3D 29VD: Crystal structure of the human METTL3-METTL14 in complex with STC-15
- 3D 29VJ: Crystal structure of the human METTL3-METTL14 in complex with STM-2457
- 3D 30EW: XN-IL lectin from Xenorhabdus nematophila in complex with lactose
- 3D 31CJ: Reduced E.coli aerotaxis receptor
- 3D 31CK: Oxidized E.coli aerotaxis receptor in MH-cap free state
- 3D 36IQ: Structure of de novo designed doxorubicin binding protein with doxorubicin bound
- 3D 9OSA: Crystal Strucutre of SwnH1
PDB Photosynthesis
- 3D 27LJ: the structure of cis-isoeugenol synthase AtaIGS1 mutant
- 3D 31CJ: Reduced E.coli aerotaxis receptor
- 3D 31CK: Oxidized E.coli aerotaxis receptor in MH-cap free state
- 3D 9MNC: Human 80S ribosome bound to small molecule SW393071
- 3D 9RKM: Crystal structure of [FeFe]-hydrogenase CbA5H from Clostridium beijerinckii in Hinact state
- 3D 9SDD: Crystal structure of ERb-ERc heterodimer from Schizochytrium sp.
- 3D 9SRP: Structure of the Diels-Alderase ChlE3 in complex with cofactor FAD
- 3D 9TN7: F420-nitrite reductase from Methanocaldococcus infernus at 1.58 A resolution
- 3D 9YGM: Babesia divergens ribosome structure by single-particle cryo-EM (3D class3, E-site tRNA)
- 3D 9YXB: Babesia divergens ribosome structure by single-particle cryo-EM (3D class1, A-, P-, and E-site tRNAs and mRNA)
PDB PFAS Degradation
- 3D 9HLN: Crystal structure of MnmA D100C mutant from Streptococcus pneumoniae with [4Fe-4S] cluster in complex with formate
- 3D 9RFP: Peptidedeformylase XisD in complex with formiate
- 3D 9Q1E: Cryo-EM Structure of the MgtA Tetramer at 2.7 A Resolution
- 3D 9Q6O: Cryo-EM Structure of MgtA in the E2-P State at 2.7 A Resolution
- 3D 9VBQ: Crystal structure of FXR in complex with agonist XJ02862-S2
- 3D 9VBR: Farnesoid X Receptor Agonists_FXR fused with a HD3 peptide
- 3D 9ZLK: Cryo-EM structure of MgtA with bound AMPPCP and magnesium
- 3D 24UU: Crystal structure of Endonuclease IV from Chlamydophila pneumoniae
- 3D 9Z11: Crystal Structure of the Poly(Hexamethylene Adipamide) (Nylon66) Hydrolase Nyl50 in Complex with Butyrate at Room Temperature
- 3D 24HR: Human KRAS G12D (GDP-bound) in complex with macrocyclic peptide inhibitor AP6252
Project Gutenberg
- Anthem EPUB PDF
- The Hound of the Baskervilles EPUB PDF
- A Christmas Carol EPUB PDF
- A Study in Scarlet EPUB PDF
- The Strange Case of Dr. Jekyll and Mr. Hyde EPUB PDF
- Romeo and Juliet EPUB PDF
- Macbeth EPUB PDF
- Thumbelina EPUB PDF
- Metamorphosis EPUB PDF
- The Communist Manifesto EPUB PDF
- The Scarlet Letter EPUB PDF
- Pride and Prejudice EPUB PDF
- Emma EPUB PDF
- The Odyssey EPUB PDF
- Don Quixote EPUB PDF
GitHub bioRxiv
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anthropics/knowledge-work-plugins
21902
Python
Open source repository of plugins primarily intended for knowledge workers to us...
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OlmLab/ZipStrain
12
Python
Official Repository for ZipStrain python package
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azizilab/amici
21
Python
Cross-attention-based cell-cell interaction inference from ST data.
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jmw86069/splicejam
34
R
Sashimi plots for RNA-seq data using detected transcripts
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brain-score/vision
186
Python
A framework for evaluating models on their alignment to brain and behavioral mea...
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Dante-Berth/PhysiGym
11
Python
PhysiGym is a tool for applying reinforcement learning to PhysiCell
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Yasas1994/Jaeger
37
Python
Jaeger is a quick and precise tool for detecting phages in sequence assemblies.
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nwamsley1/Pioneer.jl
21
Julia
CLI toolkit for fast analysis of DIA proteomics experiments and in silico librar...
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broadinstitute/bmxp
14
C
The tools that constitute a nontargeted LCMS metabolomics data processing pipeli...
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ctboughter/AIMS
11
Jupyter Notebook
AIMS - Automated Immune Molecule Separator: An analysis pipeline for distinguish...
Synthetic Biology
- Pseudomonads associated to salt-stressed plants facilitate stress adaption of soybean through enhanced lignin biosynthesis.
- Chemical ecology and convergent evolution of natural hallucinogens: From ecological defense to conserved neural targets.
- Metabolic Engineering of Microbial Cell Factories for Sustainable Production of Glycolic Acid: Pathways, Chassis, and Strategies toward Poly(glycolic acid) Bioplastics.
- Temporally Programmed Virulence Cascade Drives Progressive Maize Root Rot by Fusarium graminearum.
- Phage Intolerance Impacts Antibiotic Susceptibility and Virulence in Staphylococcus aureus.
- Glutathione peroxidase gene regulates heat stress response via trehalose synthesis in Pleurotus ostreatus.
- Bioengineered bacteria in cancer immunotherapy: mechanistic advances, therapeutic strategies and clinical potential.
- Generation of Cellular Biofactories for the Scalable Production of Surface-Engineered Extracellular Vesicles via CRISPR Genome Editing.
- Microbial intervention by Acinetobacter schindleri SR-5-1 alleviates cadmium toxicity in pea cultivation.
- Identification and characterization of pumicyclin A, a novel circular bacteriocin from Bacillus pumilus with a dispensable leader peptide.
- Developing a Minimal and Cost-Effective Cell-Free Biomanufacturing System Using an In Vitro Fluorescent Assay.
- Dual Transcriptomic Analysis of Isolates of Phytophthora sansomeana with Varying Levels of Aggressiveness Compared to P. sojae During a Time Course Infection Assay of Soybean.
- Multi-Omics Analysis Reveals Impacts of SCARB1, TYR, and TYRP1 Knockouts on Pigmentation and Metabolic Pathways in Oujiang Color Common Carp.
- Engineering an Extremely Hybrid PKS for Adipic Acid Production.
- Toward aitiopoietic cognition: bridging the evolutionary divide between biological and machine-learned causal systems.
Biotechnology
- Virtual Tumors Enable Prediction of Personalized Therapeutic Combinations for Non-Small Cell Lung Cancer.
- A GmWRKY20-GmbZIP9 transcriptional module synergistically activates GmANKTM21 to confer drought tolerance in soybean.
- Loss of ZmDMP increases phosphatidic acid production and disrupts lipid homeostasis in maize sperm cells.
- Candida albicans RLM1 Diversity Regulates Cell Wall Composition and Virulence.
- Fgf8, a gene knockout that leads to intermuscular bones-reduced of crucian carp (Carassius auratus), acts as a potentially regulatory factor in osteogenic development.
- Viral Infections and Neurodegenerative Diseases: Reinterpreting the Crosstalk Through a Dual-Role Lens.
- Glutathione peroxidase gene regulates heat stress response via trehalose synthesis in Pleurotus ostreatus.
- Bioengineered bacteria in cancer immunotherapy: mechanistic advances, therapeutic strategies and clinical potential.
- Integrating Epigenetic Memory and Plant Growth-Promoting Rhizobacteria -Mediated Signaling for Climate-Resilient Agriculture.
- Generation of Cellular Biofactories for the Scalable Production of Surface-Engineered Extracellular Vesicles via CRISPR Genome Editing.
- GhTTLL12 Coordinates With Transcriptional Regulators GhMML3 and GhMYB86 to Orchestrate Cotton Fibre Development Through Modulating Microtubule Dynamics.
- Insect Reproductive Behavior: Key Genes and Their Mechanisms of Action.
- Role of NUDT3 in skeletal myogenesis and association of regulatory genetic variants with carcass traits in pigs.
- Identification of a central CGRP circuit for trigeminal V1-mediated migraine-like pain in mice.
- Status and future of recombinant adeno-associated virus vector manufacturing.
AI & Machine Learning
- Early onset pancreatic Cancer: epidemiology, molecular features, and clinical outcomes.
- Advances in the management of pediatric low-grade glioma.
- Deep learning-based segmentation of human oocytes with cross-dataset evaluation.
- Explainable and Interpretable AI for Voice and Speech Analysis in Clinical Care: Systematic Review.
- Trends and Hot Spots in Cancer Family Resilience: A Bibliometric and Visualization Study.
- Decoding fibrosis: Transcriptomic and clinical insights via AI-derived collagen deposition phenotypes in MASLD.
- Supporting Student Mental Health With the Safespace Generative AI Chatbot: Mixed Methods Feasibility Study.
- Enhancing Physician Resilience to Generative AI: Multilevel Framework for Shared Authority, Verification, and Skill Preservation.
- Gait Analysis for Identifying Normal Cognition, Subjective Cognitive Decline, and Mild Cognitive Impairment in Parkinson Disease: Diagnostic Study.
- Beyond Area Under the Receiver Operating Characteristic Curve: Evaluating Predictive Performance Metrics Under Class Imbalance in Real-World Clinical Data.
- Enhancing Cognitive Functions of Older Adults With Software Robot: Longitudinal Exploratory Field Study.
- Continuing Medical Education Questions: April 2026.
- The Emerging Roles of AI in Self-Directed Stress Management: Systematic Review.
- Vision-Based Artificial Intelligence Technologies for Epilepsy Monitoring: Scoping Review and Taxonomy Development Study.
- Coronary computed tomography angiography to guide percutaneous coronary intervention: proceedings from the 1st CCTA-guided PCI summit in the United States.
Neuroscience
- From Metrics to Meaning in Neurological Rehabilitation: Clinicians' Perspectives on Digital Metrics of Upper Limb Functioning-A Focus Group Study.
- Neuron-specific enolase enzymatic activity as a biomarker to discriminate neurologic and orthopedic gait abnormalities in dogs.
- Position Statement of the American Society for Stereotactic and Functional Neurosurgery on Focused Ultrasound Lesioning of the Brain by Non-neurosurgeons.
- The longitudinal development of intrinsic timescales in infancy and their relation to alpha brain rhythm.
- Exploring compassionate care in rehabilitation among individuals who are involved with the criminal-legal system with traumatic brain injury: A scoping review.
- Altered controllability of functional brain networks among electronic cigarettes users with nicotine dependence.
- Editorial Note: Long-term consequences of benzodiazepine-induced neurological dysfunction: A survey.
- Tetanus Health Information on YouTube and TikTok: Cross-Sectional Analysis of Quality, Reliability, and Public Health Implications.
- Sleep lowers waking theta frequency in the rat hippocampus.
- Reply: Facial Symmetry Enhancement and Brain Network Modifications in Facial Palsy Patients after Botulinum Toxin Type A Treatment.
- Sleep fragmentation correlates with amyloid beta deposition at brain autopsy.
- Pilot Ultrastructural Observations of Trauma-Associated Myelin Alterations in Human Autopsy Brain Tissue Following Fatal Road Traffic Injury.
- Structural Brain Changes and Cognitive Impairments in Drivers with PTSD: Cross-Sectional Study.
- Connectivity- vs Scalp-Based Targeting of Accelerated Transcranial Magnetic Stimulation for Depression: A Randomized Clinical Trial.
- Exploring the association between common genetic deletions and aging: insights from the Canadian Longitudinal Study on Aging.
Climate Science
- Resource declines shape phenological and morphological responses to climate change.
- A potential overestimation of CO(2) physiological effects on evapotranspiration.
- The value of looking ahead: Comparing conventional and strategic Mountain Pine Beetle (Dendroctonus ponderosae) management policies in North America.
- Improving Forest Carbon Sink Accounting Using Integrated Satellite-Ground Observations, Machine Learning, and Ecological Process Modeling.
- Interactions between the arbuscular mycorrhizal fungus Acaulospora delicata, wheat, and aphids under drought stress.
- Behavioral responses buffer seasonal variation more strongly than endocrine and chemical responses in poison frogs.
- Integrating Epigenetic Memory and Plant Growth-Promoting Rhizobacteria -Mediated Signaling for Climate-Resilient Agriculture.
- From End Group to Tunable Comonomer: Sustainable Upcycling of Waste PET Into High-Value Added Copolyesters via a Controlled One-Pot Transesterification Process.
- Climate change and tropical medicine in the Amazon: contributions from a research center, gaps and future priorities.
- A New Approach for Quantifying the Total Amount of Organosulfur Compounds in Atmospheric Aerosols.
- Sustainability awareness among European dry eye disease specialists.
- Giant kelp-associated variation in coastal seawater chemistry across contrasting sites in Chile and Tasmania.
- Daily diet adjustments based on predefined group feeding curves: a practical and scalable approach to enhance nutrient efficiency and sustainability in pig production.
- Cognitive mapping to decode farmers' mindsets in agricultural decision-making: a systematic review.
- Hydrological seasonality drives a predictable reversal in anthropogenic pollution dominance in mountain watersheds.
Medicine
- Prohibitins in cancer: Multifaceted regulators of mitochondrial homeostasis, oncogenic signaling, tumor microenvironment, and therapeutic resistance.
- Efficacy of dual-track group CBT on emotion-related school attendance challenges and parent-adolescent perceptual bias among Chinese adolescents with depression: A non-randomized controlled trial.
- Managing leukocytosis in malignant pertussis with white blood cell depletion: An effective alternative way to exchange transfusion.
- The use of oXiris hemofilter in the initial continuous renal replacement therapy among patients with septic shock: A propensity score matched analysis.
- Comprehensive analysis of antibody-drug conjugate (ADC) targets in adenoid cystic carcinoma: examining antigen expression in relation to clinicopathological features, prognosis, and initial therapeutic outcomes.
- Targeting HER2 in urothelial carcinoma: from pathway inhibition to antibody-drug conjugates.
- Synergistic "targeting and blockade" strategy via engineered exosomes and clinical ultrasound contrast agent for hepatocyte-targeted mRNA delivery.
- Beyond the Hazard Ratio: Time-Varying Treatment Effects in Genitourinary Cancer Trials.
- Periprosthetic fracture following hip resurfacing arthroplasty: treatment guidance using the 'SAVE' classification system.
- Spatial-cellular resolution analysis of ferroptosis-associated immune microenvironment heterogeneity in osteoarthritic cartilage.
- Exploring therapeutic targets for neuroinflammation in sepsis-associated encephalopathy: a combined network pharmacology and bioinformatics approach.
- Caregivers' Perspectives on Cancer-Related Cognitive Impairment in Older Adults With Acute Myeloid Leukemia Receiving Chemotherapy.
- Long-Acting Treatment and Advanced HIV Disease - Addressing a Public Health Priority.
- Prevention and Treatment of Peanut Allergy.
- Inhalable Polymeric PROTAC Nanococktail for Targeted Protein Degradation in Idiopathic Pulmonary Fibrosis.
Genomics
- Childhood maltreatment moderates associations between SKA2 DNA methylation and suicidal ideation in african american adults with bipolar disorder.
- Spatial-cellular resolution analysis of ferroptosis-associated immune microenvironment heterogeneity in osteoarthritic cartilage.
- scDeepAPA: a deep learning framework for single-cell alternative polyadenylation identification.
- scTumorDrug: predicting cell-type-specific drug responses for heterogeneous tumors.
- Pseudomonads associated to salt-stressed plants facilitate stress adaption of soybean through enhanced lignin biosynthesis.
- Spatial transcriptomics uncovers the hybrid molecular identity, ciliated phenotype, and immune signature of adenomyosis lesions.
- S-Adenosylhomocysteine Hydrolase (SAHH) at the Crossroads of Metabolism, Epigenetics, and Plaque Stability.
- AI-CURA, an automated LLM workflow for high-accuracy genetic variant classification.
- Exploring mechanisms of scar-free skin wound healing in adult zebrafish in comparison to mouse.
- A pilot study for whole proteome tagging in Caenorhabditis elegans.
- Chemical ecology and convergent evolution of natural hallucinogens: From ecological defense to conserved neural targets.
- Beyond resistance: Emerging methods to dissect drug responses in Leishmania.
- Violence Against Women as a Public-Health Exposure: Biological Embedding, Medico-Legal Caution and Precision Prevention in the EpiWe Framework.
- Downregulation is the dominant effect of new regulatory mutations in a fungal pathogen.
- Temporally Programmed Virulence Cascade Drives Progressive Maize Root Rot by Fusarium graminearum.
Immunology
- Comprehensive analysis of antibody-drug conjugate (ADC) targets in adenoid cystic carcinoma: examining antigen expression in relation to clinicopathological features, prognosis, and initial therapeutic outcomes.
- Targeting HER2 in urothelial carcinoma: from pathway inhibition to antibody-drug conjugates.
- Bundibugyo Virus Disease in 2026 - Clinical and Public Health Responses.
- From Computationally Guided Hapten Design to Monoclonal Antibody Production: A Novel Strategy for Rapid and Sensitive Detection of Flusilazole Residues.
- Beyond Nudges: Integrating Behavioral Economics and Structural Determinants to Advance Pediatric Immunization Equity.
- 'Veni, Vidi, Vaccini': consensus-based vaccination pathway implementation in a paediatric tertiary hospital in Tuscany, Italy.
- FOLR1-targeted actinium-225-based alpha-particle therapy eliminates ovarian cancer.
- IgA is necessary and sufficient to prevent norovirus infection in mice.
- Predictive value of PfEMP1 antibody profiles for the course of controlled human malaria infections.
- GAS6 regulates mucosal langerhans cell homeostasis through cell-intrinsic and niche-dependent mechanisms.
- Tetanus Health Information on YouTube and TikTok: Cross-Sectional Analysis of Quality, Reliability, and Public Health Implications.
- Protocol for detecting cytosol-retained proopiomelanocortin by fractionation and co-immunoprecipitation assay.
- Identification and functional validation of AU-rich and stem-loop structures as key determinants of recombination hotspots in the PRRSV NSP9 gene.
- Interim Effectiveness of 2025-2026 mRNA-1283 and BNT162b2 COVID-19 Vaccines Against COVID-19-Related Outcomes Among Adults Aged ≥ 65 Years in the United States.
- Evaluation of a thermostable Newcastle disease virus D58 strain by in ovo vaccination and challenge study.
Microbiology
- Design and application of a FA-based molecularly imprinted sensor for screening anti-Fusariumoxysporum substances from Lanzhou lily endophytes.
- Bundibugyo Virus Disease in 2026 - Clinical and Public Health Responses.
- Identification of a master regulator Msd1 that governs meiotic entry in a global basidiomycete pathogen.
- Sex differences in Drosophila intestinal metabolism contribute to sexually dimorphic infection outcome and alter gut pathogen virulence.
- A comparative analysis of the oral microbiome of Amish and non-Amish individuals to strengthen our understanding of variation within the oral microbiome.
- Uncovering the genetic basis of crown rust resistance in a northern-by-southern oat biparental population.
- Revitalizing contaminated soils: The combined power of modified biochar and intrinsic bacteria for heavy metal and petroleum hydrocarbon removal and plants performance.
- Obligatory intracellular bacterium Anaplasma phagocytophilum AnkA regulates actin dynamics and spatiotemporal bacterial release.
- Epicatechin and High-Molecular Weight Fraction Do Not Recapitulate the Antiobesity and Antidiabetes Activities of Whole Cocoa Extract.
- Downregulation is the dominant effect of new regulatory mutations in a fungal pathogen.
- Prevalence aware feature selection improves biomarker identification in microbiome studies.
- Exploring gut microbiota responses to low-dose thallium exposure via food chain transfer: insights from soil-plant-human systems.
- Targeting microbiota-gut-brain axis with phytochemicals: a mechanistic roadmap for dementia.
- Antibiofilm and antivirulence effects of cinnamaldehyde on Acinetobacter baumannii.
- Phage Intolerance Impacts Antibiotic Susceptibility and Virulence in Staphylococcus aureus.
Evolutionary Biology
- Co-option and innovation in neural crest evolution.
- Chemical ecology and convergent evolution of natural hallucinogens: From ecological defense to conserved neural targets.
- Genus- and host-associated codon usage bias patterns in coronavirus spike genes.
- Correction to: Comparative Anatomy Supports the Evolution of Nocturnality in the Extinct Hawaiian Ibis Apteribis.
- Loss of MHC I and II function in the genome of glacier lanternfish provides insight into evolution of vertebrate immune systems.
- Highly Active Hydrogen Evolution Achieved by Microwave-Assisted Rapid Anchoring of Single Platinum Atom on S-Ti(3)C(2)T(x).
- High rate of mutation and efficient removal by selection of structural variants from natural populations of Caenorhabditis elegans.
- The Natural Course of Age-Related Scattered Hypofluorescent Spots on Late-Phase ICGA (ASHS-LIA): Structural Evolution and Neovascular Complications.
- Evolutionary history of the α-Carbonic Anhydrase (αCA) gene family in the phylum Arthropoda, with comparisons to αCA in chordates.
- A near telomere-to-telomere genome assembly of the Amur stickleback ( Pungitius sinensis) reveals structural variation and parallel evolution of sticklebacks.
- Complete mitochondrial genome sequence data of Pterygoplichthys gibbiceps (Actinopterygii, Loricariidae).
- Evolution and Future Directions of the National Measles Immunization Program in the Republic of Korea.
- The academic research organization model in universityindustry collaboration: Policy evolution and institutional reform in Japan's university hospitals.
- The combination of Lactobacillus acidophilus DSMZ 26280 and Limosilactobacillus reuteri DSMZ 25441 has an impact on clinical course and gut microbiota of children with acute infectious diarrhea.
- European simulation-based education and training in anaesthesiology and intensive care: evidence, value and inevitable evolution.
Molecular Ecology
- Resource declines shape phenological and morphological responses to climate change.
- DNA metabarcoding to estimate diet overlap between the introduced Joro spider (Trichonephila clavata) and three native orb-weaving spiders.
- Habitat heterogeneity and bird diversity in an urban fringe wildlife sanctuary in New Delhi, India.
- A Novel Genetic Management Procedure for Preserving the Genetic Composition of Captive Founders.
- Predictors of Food Web Resistance to Environmental Change.
- Multiple fish diversity facets in the Nu-Salween basin: Unexpected bimodal patterns, environmental drivers, threats, and conservation implications.
- Cities at Sea: Coastal Urbanization Generates Local Biodiversity Hotspots but Homogenizes Marine Fish Communities Regionally.
- Nanopore sequencing dataset of marine rocky shoreline microbial communities from the UK's first marine citizen science week event.
- Existing evidence on the impact of climate risk on real estate valuations: a systematic map.
- A pragmatist approach to bridging tables and ontologies through LinkML and punning.
- The genomic footprint of myna invasion in Oman showcases desert isolation and urban connectivity.
- Do not leave fungi out of impact assessments.
- Linking species local trends from assemblage monitoring to global extinction risk.
- Unveiling fine-scale distribution of endemic shrub Prunus ledebouriana through integrating multi-source remote sensing with deep learning.
- Evaluation of the genes CYP(85)A(2), BZR1, and CAD1 in the attenuation of cadmium in seedlings of the species Schizolobium parahyba var. amazonicum (Huber ex Ducke) Barneby (PARICÁ) under different concentrations of 24-epibrassinolide.
arXiv Physics
- PDF Rapid Cavity-Based Mid-Circuit Measurement and Feedforward in a Neutral Atom Array
- PDF Polyatomic Thermal Radiative Dissociation in Microcavities
- PDF Mechanism of Band Gap Formation in Beam Networks
- PDF Exact log-odds representation and mean-field criticality of a growing social group model
- PDF LF-MightyPix: A second HV-MAPS prototype for the {LHCb} Mighty-Tracker
- PDF A new perspective in linear Cauchy Elasticity: variational minimum principles for statics, dynamics, and heterogeneous materials
- PDF Two-Electron Effects Extend High-Harmonic Generation into the keV Regime
- PDF Offset-continuation-trajectory stacking based on common-reflection-point kinematics for five-dimensional prestack dataset regularization and enhancement
- PDF Coupled atmospHere Interior modeL Intercomparison (CHILI). I. Evolutionary Modelling -- Primordial Magma Oceans of Earth and Venus
- PDF Material identification using laboratory X-ray beam tracking: quantitativeness and signal-to-noise ratio requirements
- PDF Quantum nuclear and band-dispersion effects recover near-UV absorption in short-hydrogen-bonded organic crystals
- PDF A Grounded Evidence-Retrieval Benchmark and Hybrid RAG Framework for Silicon Pixel Detector R&D
- PDF On the localization transition from MAA to AA models
- PDF A Physics-Informed Fourier-Wavelet Transformer for Multiscale Computational Fluid Dynamics Surrogate Modeling
- PDF Widely tunable optical parametric oscillation and visible light generation in 4H-SiC microresonators
arXiv Mathematics
- PDF Critical Erd{\H o}s-Rényi digraph: all eigenvectors away from zero are delocalized
- PDF A Resolution of Erdős Problems 593 and 1177: Obligatory Triple Systems and Exact Spectra
- PDF Queues with Correlated Service Times -- the $M/M_D/c$ Model
- PDF New Bounds for the Last Iterate of the Stochastic subGradient Method
- PDF An Improved Lower Bound for the Erdős-Lovász Cover Number Problem
- PDF Turán results for posets and their alternating cycles
- PDF A Degree-Four Lemniscate Path Theorem
- PDF Data-Based Dynamical Systems Reconstruction: An Adequacy/Reliability Test
- PDF The Sylow Divisor Condition: a Resolution of Erdős Problem 768
- PDF Structural Reductions for Monochromatic Matchings and Ramsey Tilings
- PDF Roelcke and WAP compactifications of automorphism groups of ultrahomogeneous cyclically ordered sets
- PDF On doubly critical polyharmonic double phase problems: Existence and non-existence of solutions
- PDF The inverse reduction map in the quantum Littlewood-Richardson bijection
- PDF Amitsur groups of primitive Fano threefolds
- PDF From $L_\infty$ algebroids to $L_\infty$ spaces: Part I
arXiv Computer Science
- PDF DiffusionBench: On Holistic Evaluation of Diffusion Transformers
- PDF InSight: Self-Guided Skill Acquisition via Steerable VLAs
- PDF BenchX: Benchmarking AI Models for Cancer Detection and Localization with Demographic and Protocol Biases
- PDF Stability Checking of Markov Jump Linear Systems via Probabilistic Temporal Logic (Extended Version)
- PDF New Bounds for the Last Iterate of the Stochastic subGradient Method
- PDF FLAT: Feedforward Latent Triangle Splatting for Geometrically Accurate Scene Generation
- PDF FLUX3D: High-Fidelity 3D Gaussian Generation with Diffusion-Aligned Sparse Representation
- PDF "Zooming In" on Agentic Web Browsers as Assistive Technologies: A Case Study with a Low-Vision Technology Expert
- PDF First-Order Recoverability Collapse in Self-Referential Information Decoders
- PDF OpenThoughts-Agent: Data Recipes for Agentic Models
- PDF It's Complicated: On the Design and Evaluation of AI-Powered AAC Interfaces
- PDF Building a Low-cost Network Digital Twin for the IoT-Edge-Cloud Continuum Using Open-Source Tooling
- PDF Real vs. Complex Spectral Bases for Neural Operators: The Role of Green's Function Alignment
- PDF IV-CoT: Implicit Visual Chain-of-Thought for Structure-Aware Text-to-Image Generation
- PDF Complexity of Clique-Guarded First-Order Logic with Counting
arXiv Quantitative Biology
- PDF Data-Based Dynamical Systems Reconstruction: An Adequacy/Reliability Test
- PDF DeepBD: A Grounded Agentic Workflow for Variant Prioritization and Diagnosis of Genetic Birth Defects
- PDF A pilot study examining transcranial photobiomodulation therapy intervention in college students with insomnia
- PDF Extended pseudo-spectral physics-informed neural networks for phase-field models
- PDF A parameterized family of balance indices for phylogenetic networks
- PDF CABS-flex standalone 3: an open command-line platform for protein flexibility simulation, peptide structure modeling, and protein-peptide docking
- PDF cuSBF: A Minimizer-Aware Bloom Filter for Genomic Sequence Data on Modern GPUs
- PDF Novel Triple-Based Problems for the Construction of Phylogenetic Networks via Least Common Ancestors
- PDF The impact of population heterogeneity on the redundancy principle
- PDF EEG Interpretation Across Chant Listening: A Single-Subject Pilot Investigation Using Spectral and Functional Connectivity Analysis
- PDF Average Rankings Mask Per-Subject Optimality: A Friedman-Nemenyi Benchmark of EEG Motor-Imagery BCI Decoders
- PDF Machine learning-based modeling to predict inhibitors for targets of Alzheimer's Disease
- PDF Graph-based analysis of inflammatory profiles in New Onset Refractory Status Epilepticus (NORSE)
- PDF Exact Enumeration of Phylogenetic Networks: The Tree-Child, Reticulation-Visible and Orchard Hierarchy
- PDF Hierarchical models for large chemical reaction networks
arXiv Quantitative Finance
- PDF Randomized Neural Networks for estimation of exposure profiles and Credit Valuation Adjustment (CVA) for American Equity Options
- PDF Path Space Robust Bayesian Portfolio Selection
- PDF Empirical Confirmation of the Square-Root Law of Market Impact in a U.S. Large-Cap Equity
- PDF Diagonal Frog: High-order positivity-preserving FD schemes for anisotropic Fokker-Planck equations
- PDF Monotonicity of Normalized Implied-Volatility Coordinates under No-Arbitrage
- PDF Relaxation Times for Nonextensive Systems Using Gradient Flow for the Maximization of Tsallis Entropy: An Application to Financial Market Dynamics
- PDF Anatomy of the Market: A Body-Tail Test of Factor Models
- PDF Analytic Pricing of Bermudan Swaptions with Few Exercise Dates
- PDF Continuous Hidden Markov Models for Equity Returns: Heavy-Tail Emission Families and Regime-Conditional Value-at-Risk
- PDF Asymmetry PRISM: A CPU/GPU Portfolio Optimization Engine for Deadline-Bounded Institutional Rebalancing
- PDF When Staking Rewards Compound: Measuring the Impact of Ethereum's Pectra Upgrade
- PDF Financial Frequency Combs
- PDF Path-dependent Affine Processes
- PDF Mitigating Adverse Selection in Concentrated Liquidity AMMs with Dynamic Fees: An Agent-Based Model Approach
- PDF IPO Finance Agent: Evaluation of LLM Financial Analysts beyond Finance Agent v2, with Automated Rubric Generation -- the Case of the SpaceX (SPCX) IPO