Protein Data Bank
- 3D 10AH: Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 N530D mutant complexed with trans-BAS-2
- 3D 10AI: Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 N530D mutant complexed with cis-BAS-2
- 3D 10BR: Crystal structure of B. burgdorferi HtrA PDZ1-2 domains
- 3D 10HA: Crystal Structure of Honeybee (Apis mellifera) omega class glutathione S-transferase AmGST-O1
- 3D 10HM: Trypanosoma brucei CLK1 kinase domain in complex with a covalent Amidobenzimidazole (AB4) inhibitor
- 3D 10SD: The cryoEM structure of T10 type2 nanofiber
- 3D 10SG: The CryoEM structure of T12 type1 nanofiber
- 3D 10SH: The CryoEM structure of T12 type2 nanofiber
- 3D 11MG: Cryo-EM Structure of Human C3 Pro-Convertase bound to the Compstatin Analog Cp60, TED Conformation 1
- 3D 11MH: Cryo-EM Structure of Human C3 Pro-Convertase bound to the Compstatin Analog Cp60, TED Conformation 2
PDB Nitrogen Cycle
- 3D 12RH: Structure of turkey hemoglobin A covalently bound with epigallocatechin gallate
- 3D 21EJ: Crystal structure of a cupin protein (tm1459, H52A mutant) soaked in CuSO4
- 3D 23UB: Structure of the CYP102A1 Heme Domain with 2-(undecylcarbamoyl)benzoic acid
- 3D 23UH: Structure of the CYP102A1 Heme Domain with 2-(undecylcarbamoyl)benzoic acid and benzene
- 3D 27IL: Crystal structure of Imine Reductase Mutant(R7) from Actinoalloteichus hymeniacidonis in complex with NADPH
- 3D 29OI: AetF, a single-component flavin-dependent tryptophan halogenase, in complex with 8-bromotryptoline
- 3D 9EAX: CRYSTAL STRUCTURE OF THE FMN-BINDING DOMAIN OF HUMAN CYTOCHROME P450 REDUCTASE (MUTANT V164M)
- 3D 9EAY: CRYSTAL STRUCTURE OF THE FMN-BINDING DOMAIN OF HUMAN CYTOCHROME P450 REDUCTASE (MUTANT H183Y)
- 3D 9EAZ: CRYSTAL STRUCTURE OF THE FMN-BINDING DOMAIN OF HUMAN CYTOCHROME P450 REDUCTASE (MUTANT A229T)
- 3D 9EB0: CRYSTAL STRUCTURE OF THE FMN-BINDING DOMAIN OF HUMAN CYTOCHROME P450 REDUCTASE (MUTANT D211N)
PDB Photosynthesis
- 3D 22VL: Cryo-EM structure of Chlamydomonas reinhardtii chloroplast F1Fo-ATP synthase
- 3D 23UB: Structure of the CYP102A1 Heme Domain with 2-(undecylcarbamoyl)benzoic acid
- 3D 23UH: Structure of the CYP102A1 Heme Domain with 2-(undecylcarbamoyl)benzoic acid and benzene
- 3D 27IL: Crystal structure of Imine Reductase Mutant(R7) from Actinoalloteichus hymeniacidonis in complex with NADPH
- 3D 29OI: AetF, a single-component flavin-dependent tryptophan halogenase, in complex with 8-bromotryptoline
- 3D 9EAX: CRYSTAL STRUCTURE OF THE FMN-BINDING DOMAIN OF HUMAN CYTOCHROME P450 REDUCTASE (MUTANT V164M)
- 3D 9EAY: CRYSTAL STRUCTURE OF THE FMN-BINDING DOMAIN OF HUMAN CYTOCHROME P450 REDUCTASE (MUTANT H183Y)
- 3D 9EAZ: CRYSTAL STRUCTURE OF THE FMN-BINDING DOMAIN OF HUMAN CYTOCHROME P450 REDUCTASE (MUTANT A229T)
- 3D 9EB0: CRYSTAL STRUCTURE OF THE FMN-BINDING DOMAIN OF HUMAN CYTOCHROME P450 REDUCTASE (MUTANT D211N)
- 3D 9EB1: CRYSTAL STRUCTURE OF THE FMN-BINDING DOMAIN OF HUMAN CYTOCHROME P450 REDUCTASE (MUTANT T142A)
PDB PFAS Degradation
- 3D 9HLN: Crystal structure of MnmA D100C mutant from Streptococcus pneumoniae with [4Fe-4S] cluster in complex with formate
- 3D 9RFP: Peptidedeformylase XisD in complex with formiate
- 3D 9Q1E: Cryo-EM Structure of the MgtA Tetramer at 2.7 A Resolution
- 3D 9Q6O: Cryo-EM Structure of MgtA in the E2-P State at 2.7 A Resolution
- 3D 9VBQ: Crystal structure of FXR in complex with agonist XJ02862-S2
- 3D 9VBR: Farnesoid X Receptor Agonists_FXR fused with a HD3 peptide
- 3D 9ZLK: Cryo-EM structure of MgtA with bound AMPPCP and magnesium
- 3D 24UU: Crystal structure of Endonuclease IV from Chlamydophila pneumoniae
- 3D 9Z11: Crystal Structure of the Poly(Hexamethylene Adipamide) (Nylon66) Hydrolase Nyl50 in Complex with Butyrate at Room Temperature
- 3D 24HR: Human KRAS G12D (GDP-bound) in complex with macrocyclic peptide inhibitor AP6252
Project Gutenberg
- Grimms' Fairy Tales EPUB PDF
- The Bible, Douay-Rheims Version EPUB PDF
- Anne of Green Gables EPUB PDF
- The Iliad EPUB PDF
- Mansfield Park EPUB PDF
- The Souls of Black Folk EPUB PDF
- A Modest Proposal EPUB PDF
- The Strange Case of Dr. Jekyll and Mr. Hyde EPUB PDF
- The Kama Sutra EPUB PDF
- Walden EPUB PDF
- The Masque of the Red Death EPUB PDF
- Romeo and Juliet EPUB PDF
- The Odyssey EPUB PDF
- Wuthering Heights EPUB PDF
- Tarzan of the Apes EPUB PDF
GitHub bioRxiv
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JSONbored/awesome-claude
265
MDX
HeyClaude is a curated registry and distribution surface for Claude and AI-workf...
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brain-score/vision
186
Python
A framework for evaluating models on their alignment to brain and behavioral mea...
-
MGXlab/Jaeger
10
Python
Jaeger is a quick and precise tool for detecting phages in sequence assemblies.
-
Yasas1994/Jaeger
37
Python
Jaeger is a quick and precise tool for detecting phages in sequence assemblies.
-
mims-harvard/ToolUniverse
1469
Python
Democratizing AI scientists with ToolUniverse
-
Synthyra/FastPLMs
44
Python
Easy to use and efficient implementations of Protein Language Models
-
hanjinliu/cylindra
17
Python
Fourier analysis and subtomogram averaging of heterogenic cylindrical structures
-
CultureBotAI/CultureMech
9
HTML
Microbial Culture Media Knowledge Graph - Comprehensive collection of 10,000+ cu...
-
grobidOrg/grobid
4947
Java
A machine learning software for extracting information from scholarly documents
-
jianshu93/DartUniFrac
6
Rust
Approximate UniFrac via Weighted MinHash 🦀
Synthetic Biology
- Decoupling of global metabolic flux and proteome partitioning in bacteria.
- Whole-genome characterization of halotolerant Enterobacter roggenkampii OSNO4 and its potential for climate-resilient agriculture.
- SUMO proteases implement regulatory logic across Hormonal Networks to enact Plant Stress Responses.
- A single lysergyl peptide synthetase assembles lysergic acid amides in Aspergillus species.
- Integrated Lipidomic, Transcriptomic, and Metabolomic Analyses Reveal the Regulatory Mechanism Underlying Venom Synthesis in Parotoid Glands of Bufo gargarizans.
- Decoding multidimensional regulatory networks in Streptomyces to accelerate natural product discovery and production.
- Whole-Cell Biosynthesis of 2,5-Furandicarboxylic Acid for Sustainable Manufacturing: Prospects and Challenges.
- Functional Divergence and Conservation in the QueC Protein Family (PF06508): From tRNA Modification to Anti-Phage Defense.
- Acquired mutations in transcriptional regulator hns and lipopolysaccharide biosynthesis and modification genes impact colistin resistance and fitness of mcr-carrying E. coli.
- Intrinsic resistance networks shape cefiderocol susceptibility in ST258 Klebsiella pneumoniae.
- Integrating network pharmacology and MALDI-MSI spatial metabolomics revealing ellagic acid as the key anti-pharyngitis agent in Fructus Chebulae and its key metabolic pathways in pharyngeal tissues.
- Levan Inspired Hybrid Composites Materials: Bridging Natural Polysaccharides with Biomedical Technology.
- Systemic Metabolic Engineering of Plasmid-Free Escherichia coli for Sustainable High-Yield Indigoidine Production.
- Systematically Engineering Escherichia coli for Efficient and Complete Hydroxytyrosol Biosynthesis.
- Brassinosteroids define the stem elongation zone along the apical-basal axis to coordinate gravitropism and self-standability.
Biotechnology
- HSPA6 Confers Lenvatinib Resistance in Hepatocellular Carcinoma by Promoting Phase Separation-Mediated TXNRD1 Stabilization to Suppress Ferroptosis.
- Status of Alzheimer's and Parkinson's Disease Detections and Treatments.
- The NAC Transcription Factor SlNAP2 Enhances Tomato Resistance to Ralstonia solanacearum.
- Aging, Dauer, and Stature Phenotypes Are Conferred by Structure-Directed Missense Mutations in the Endogenous AGE-1/Phosphatidylinositol 3-Kinase Catalytic Subunit.
- Organ-on-a-chip as a next-generation tool in drug development: A bibliometric and patent analysis.
- CRISPR-Based Programmable RNA-Responsive Protein Materials.
- Distal enhancer-insulator module of GDF6 is essential for cochlear formation.
- Screening for RPE65 genetic variants in Egyptian children with inherited retinal disorders: a study from a tertiary eye care center in Egypt.
- Retraction Note: Elucidation of CRISPR-Cas9 application in novel cellular immunotherapy.
- Phytohormones as key regulators of plant resilience under salinity and extreme temperatures.
- The AT-HOOK MOTIF CONTAINING NUCLEAR LOCALIZED gene promotes somatic embryogenesis and polyploidy formation in Liriodendron hybrids.
- Engineering Paracoccus denitrificans PD1222 for Fusarium solani cutinase-mediated biodegradation of poly(butylene adipate-co-terephthalate).
- Systemic Metabolic Engineering of Plasmid-Free Escherichia coli for Sustainable High-Yield Indigoidine Production.
- Bacterial Laccase: Recent Advances in Production, Engineering Strategies, and Diagnostic Applications.
- Preparing cellular and gene therapies: PPE, equipment, and workflow insights for health-system pharmacy leaders.
AI & Machine Learning
- Dynamic wavelet-based augmentation for enhanced EEG-based imagined speech classification.
- A recyclable, mechanically robust, and anti-freezing chitosan/polyvinyl alcohol/polyaniline conductive hydrogel for multifunctional sensing application.
- Artificial Intelligence and Mental Health Discourse: Methodological Reflections for Nursing Practice.
- Medical Consultation and HIV Testing After AI-Based Symptom Check: Retrospective Cohort Study.
- Performance of Zero-Shot Classifiers for Categorizing RCT Abstracts by Intervention Type: Validation Study.
- The Open Syndrome Definition as a Machine-Readable Standard for Public Health: Design and Implementation Study.
- Development of a Knowledge Map for Managing Symptoms of Graft-Versus-Host Disease in Patients Undergoing Hematopoietic Stem Cell Transplantation.
- Gaps in Patient-Facing Information on Artificial Intelligence in Cancer Care: A Cross-Sectional Analysis.
- Studying the Deep Evolution of Viruses in the Era of Artificial Intelligence Structure Prediction.
- AI-Assisted Digital Single-Molecule Activity Tracker for Decoupling Intrinsic Heterogeneity from Photo-Oxidative Damage in High-Photon-Flux Enzymology.
- SPADE: A Deep Learning Framework for Spatial Mapping and Quantitative Cell-Cell Interaction Inference.
- Polarization Dynamics in Ferroelectrics: Insights Enabled by Machine Learning Molecular Dynamics.
- Visualizing Millisecond Atomic Dynamics of Nanocrystals in Liquid.
- Beyond Visual Consensus: Tiered Reference Framework for AI Cystoscopy Studies.
- Authors' Reply: Beyond Visual Consensus: Tiered Reference Framework for AI Cystoscopy Studies.
Neuroscience
- Promoting Brain Health in the Context of Normal Aging and Mild Cognitive Impairment: A Tutorial.
- Long-term prognosis of patients surviving progressive multifocal leukoencephalopathy.
- Lamprey 3D single-cell transcriptomics reveals ancestral and specialized features of the vertebrate brain.
- Brain-wide topographic coordination of rotating waves.
- Improving Access to Traumatic Brain Injury Care Through Learning Health Systems Change: Community-Based Participatory Research Through Human-Centered Design.
- Movement Through Time: The Evolution of Treatment for People With Parkinson Disease.
- Learning engages transient and sustained cellular mechanisms in the human brain.
- Reliability and validity of the Turkish version of the extended Barcelona Music Reward Questionnaire.
- Evaluation of steroids for acute COVID in the prevention of long COVID in children: An EHR and pediatric cohort study from the RECOVER Initiative.
- Movement Through Time: The Evolution of Treatment for People with Parkinson Disease.
- Digital measurement of ocular microtremor in Parkinson's Disease: Analytical and clinical validation.
- Neurobrucellosis: A Narrative Review.
- A preliminary study on the measurement of anal sphincter in healthy adult women by transluminal dual-plane shear wave elastography.
- Integrity in six key brain regions predicts numeric working memory performance in 30,000 middle-aged and older adults: A UK Biobank magnetic resonance imaging study.
- A central amygdala-locus coeruleus pathway mediating pain under chronic stress.
Climate Science
- The Effects of Climate Change on Obstetric and Gynecologic Health.
- Traffic condition prediction for highway within work zones under dynamic traffic organization changes.
- A stable hothouse triggered by a tipping mechanism.
- Global stability of the Atlantic overturning circulation: edge state, long transients and boundary crisis under CO2 forcing.
- Quantifying and minimizing uncertainty in tipping points in ecological networks.
- Impact of non-symmetric α-stable Lévy processes on mean exit time in abrupt climate transitions.
- Occupational and Environment-Related Cardiovascular Disease: A Comprehensive Review of the Literature.
- Solar-Driven Bifunctional Adsorption-Storage Films for Ultra-Fast Dehumidification and Freshwater Supply in Low-carbon Buildings.
- H(2)S generated by L-cysteine desulfhydrase (SlLCD1) enhances heat tolerance in tomato via antioxidant capacity and stomatal modulation.
- Leishmaniasis Transmission Risk at the Forest-Peridomestic Interface in an Area of Southern Sinaloa, Mexico: Entomological, Molecular, and Climatic Evidence.
- Gut microbiota modulation in the prevention and treatment of heat stroke.
- Insights from the Convolution of Emission Inventories with Flux Footprints from Tall Eddy Covariance Towers at Three European Cities.
- A Multi-Factor Habitat Suitability Model for Asian Elephants in the Greater Mekong Subregion: Effects of Vegetation and Climate.
- Unified climate factors predict influenza outbreak seasonality across tropical and temperate regions.
- Reimagining Global One Health Governance: How the International Mental Health Organization and the International Health Tribunal Bridge Psychosocial and Environmental Frontlines.
Medicine
- Re-challenge strategies in neuroendocrine tumours: adding another arrow in the quiver?
- Hypoxia-induced inflammation and protective autophagy in dental pulpitis.
- A biocompatible copper based therapeutic nanoplatform for CD44 specific tumor targeted therapy and potent immune reprogramming.
- Stealthy systemic circulation of spatially controlled tumor microenvironment-activated bioadhesive proteinic nanoparticles for pancreatic cancer chemotherapy.
- Mechanisms of resistance to androgen deprivation therapy in prostate cancer.
- Computational investigation of single herbal drugs for diabetes and obesity using knowledge graph and network pharmacology.
- Experience of Registered Nurses with Missed Nursing Care in Acute Psychiatric Settings: A Descriptive Qualitative Study.
- Emerging treatment options for chronic obstructive pulmonary disease: a look into 2026 and beyond.
- Reply: Clinical Decision-Making Beyond Noninferiority in Office-Based Treatment of Recurrent Low-Grade Ta Bladder Tumors.
- Determinants of Housing Stability in Serious Mental Illness: An Integrative Review and Implications for Mental Health Nursing.
- KLF4 Promotes a KRT13+ Hillock-Like State in Lung Squamous Cell Carcinoma.
- Discovery of Jatrophane Diterpenoids as JAG1-Notch Signaling Inhibitors for the Treatment of Liver Fibrosis.
- Fluorescence Lifetime and Smartphone-Enabled Detection of Amyloid-β for Diagnosis and Staging in Alzheimer's Disease.
- Thrombectomy for Pediatric Large Vessel Occlusion Stroke With Mild Presenting Symptoms.
- Phase 2 Futility Trials in Alzheimer Disease and Mild Cognitive Impairment: A Cohort Analysis of the ADNI Data Set.
Genomics
- Genomic insights into Salmonella Rissen from Thailand: Prophage substitution in phase 2 flagellar-encoding region and hotspot of multidrug resistance genes in the chromosome.
- Do interactions between different Selfish Genetic Elements matter?
- HSPA6 Confers Lenvatinib Resistance in Hepatocellular Carcinoma by Promoting Phase Separation-Mediated TXNRD1 Stabilization to Suppress Ferroptosis.
- SPADE: A Deep Learning Framework for Spatial Mapping and Quantitative Cell-Cell Interaction Inference.
- Multimodal Imaging Reveals Rapid Catecholamine Uptake and Release by Neutrophils.
- Tandem Duplication-Driven Neofunctionalization of UDP-Glycosyltransferases Shapes the Diversification of Triterpenoid Saponins in the Cucurbitaceae.
- CD4(+) T cells impair tumor growth through IL-3 and TNF-dependent vascular damage.
- Lamprey 3D single-cell transcriptomics reveals ancestral and specialized features of the vertebrate brain.
- Epigenetic-Genetic Crosstalk at the Cancer-Diabetes Interface: Convergent Molecular Pathways, Multi-Omics Biomarkers, and Dual Therapeutic Targets.
- Whole-genome characterization of halotolerant Enterobacter roggenkampii OSNO4 and its potential for climate-resilient agriculture.
- Towards a unified model of aneuploid karyotype dynamics.
- Adiponectin exerts sex-dependent effects on lipid, amino acid, and glucose metabolism during caloric restriction.
- scMagnifier: Resolving fine-grained cell subtypes via GRN-informed perturbations and consensus clustering.
- Correction to 'Unveiling the Potential of Lentilactobacillus hilgardii in Malolactic Fermentation: Comparative Genomics and Fermentation Dynamics'.
- Integrated Lipidomic, Transcriptomic, and Metabolomic Analyses Reveal the Regulatory Mechanism Underlying Venom Synthesis in Parotoid Glands of Bufo gargarizans.
Immunology
- Association of Respiratory Syncytial Virus Vaccination During Pregnancy With Adverse Obstetric and Neonatal Outcomes.
- The anti-CD33 antibody drug conjugate gemtuzumab ozogamicin depletes and functionally resets CD33+ myeloid-derived suppressor cells in patients with metastatic cancer: a phase II single arm, open label trial.
- Killer Peptide: An antibody-derived self-assembling peptide bridging antimicrobial and host-defense mechanisms.
- Kyasanur Forest Disease: Advances in Experimental Animal Models, Immune Assays, and Challenges in Vaccine Development.
- Allosteric Inhibition of Polycomb Repressive Complex 2 by an EZH2-Selective Small Molecule Inhibitor.
- An HIV vaccine blueprint.
- TL1A/DR3 signaling deletion attenuates mucosal inflammation and alveolar bone loss in a murine model of spontaneous periodontitis.
- uPAR/suPAR Signaling and Organ Crosstalk in Cardiovascular-Kidney-Metabolic Syndrome.
- [HER2 status assessment in carcinomas of various localizations. A multicenter morphological study in the Russian Federation].
- Gaps and barriers preventing sustained delivery of HPV vaccination in Kano, Kaduna, and Lagos states: An exploratory qualitative study.
- A Systematic Analysis of Lipid-Protein Interactions in the Protein Data Bank.
- Gluten Analysis and Regulation: Scientific, Analytical, and Economic Dimensions of Gluten-Free Assurance.
- VEGFR2 inhibition potentiates STING-mediated antitumor immunity.
- ACP, AMA Decry Executive Order to Change Childhood Vaccine Schedule.
- Lessons Learned From the COVID-19 Vaccines International Pregnancy Exposure Registry: Insights for Designing and Implementing Global Pregnancy Safety Studies.
Microbiology
- Broad-spectrum biocontrol of postharvest rot in cold-stored table grapes by psychrotrophic yeasts and grapevine-derived extracts.
- Predictive modeling of Staphylococcus aureus growth and enterotoxin production in chicken cuts.
- The ABRE-BINDING FACTOR 4-eukaryotic translation initiation factor 2B β module mediates drought-potentiated Turnip mosaic virus susceptibility in Brassica juncea.
- Predictive Biomarkers for Immune Checkpoint Inhibitor Efficacy: Challenges, Innovations, and a Pathway to Precision Medicine in the Era of Cancer Immunotherapy.
- Killer Peptide: An antibody-derived self-assembling peptide bridging antimicrobial and host-defense mechanisms.
- Allopatric coevolution: Migratory predators may facilitate mimicry between geographically nonoverlapping species.
- Tracking the roots of zoonoses.
- Decoupling of global metabolic flux and proteome partitioning in bacteria.
- Biocontrol of rice blast by Pseudomonas mosselii PR5 through seed priming and foliar application reduces reliance on chemical pesticides.
- Comparative analysis of gut microbiome alterations in early- and late-onset preeclampsia: A case control study.
- The NAC Transcription Factor SlNAP2 Enhances Tomato Resistance to Ralstonia solanacearum.
- Flotillin-1 Regulates Enteropathogenic Escherichia coli Pedestal Length.
- NSUN2-mediated m5C modification of BHLF1 RNA facilitates the lytic replication of Epstein-Barr virus.
- Signal peptide cleavage and ectodomain regions of GP2 are required for PRRSV infection.
- Genomic analysis of environmentally sourced Stenotrophomonas species from Fiji and Australia.
Evolutionary Biology
- Studying the Deep Evolution of Viruses in the Era of Artificial Intelligence Structure Prediction.
- Allopatric coevolution: Migratory predators may facilitate mimicry between geographically nonoverlapping species.
- Persistent selection on size explains micro- and macroevolutionary alignments in fly wings.
- Conformity to popular, not average, opinions: Models, data, and evolution.
- Movement Through Time: The Evolution of Treatment for People With Parkinson Disease.
- Geometric Evolution of Perylene-Based Intermolecular π-π Dimers Toward Static and Dynamic Multicolor Emission.
- [Evolution of integrated morphological prognostic indices in breast cancer diagnosis. Total malignancy score and nottingham prognostic index].
- [Morphological and molecular-genetic evolution of the endometrial polyp to adenocarcinoma].
- Movement Through Time: The Evolution of Treatment for People with Parkinson Disease.
- Clinical and imaging evolution of anti-GAD65-associated epilepsy: A clinical vignette.
- Evolution of artificial intelligence in breast cancer pathology: a bibliometric analysis.
- Orientation-Dependent Thermal Morphological Evolution of α-Fe Nanopillars.
- The evolution of kidney surgery for renal masses in Switzerland - a retrospective analysis.
- Did avian-like pulmonary anatomy increase the susceptibility of dinosaurs to fungal diseases? Extending the "fungal infection mammalian selection" hypothesis.
- SARS-CoV-2 Evolution and Its Implications for RT-PCR Diagnostic Performance.
Molecular Ecology
- Towards a unified model of aneuploid karyotype dynamics.
- Leaf beetle diversity on a Southeast Asian continental island: Taxonomy, DNA barcoding, and preliminary evolutionary insights from Cat Ba Island, Vietnam.
- Biodiversity drives the choice; linguistic diversity fine-tunes the direction: Ethnofloral megadiversity in the Mexican ethnobotany.
- Adult paclobutrazol exposure impairs zebrafish reproduction: evidence from fertility outcomes and gonadal histology.
- Geospatial analysis of land use land cover patterns and floristic diversity across urban habitats in Central Himachal Pradesh, North Western Himalaya, India.
- Bacterial Microbiota Signatures Suggest Acclimation of the Gorgonian Leptogorgia sarmentosa to Highly Impacted Environments in the Mediterranean Sea.
- Metagenomic analysis of water column samples collected from Green Canyon 233 prior to the Deepwater Horizon incident.
- Microbial co-occurrence patterns and community assembly in seamount sediment cores: disentangling the effects of assembly processes on β-diversity.
- Balancing conflict and coexistence: Interactions between invasive monk parakeets and native urban birds.
- Method Validation for Phenylalanine Analysis in Unconventional Food Plants.
- Microhabitat-specific restructuring of soil protist communities along a tropical land-use intensification gradient.
- PopMAG: a Nextflow pipeline for population genetics analysis based on metagenome-assembled genomes.
- Decoding plant volatile stress signals across scales: from molecular responses to ecosystem dynamics.
- Candling Analysis of Egg Development in an Endangered Bird Species Crested Ibis (Nipponia nippon).
- Biodiversity and emerging infectious threats: the microbial dark matter of Southwest China.
arXiv Physics
- PDF Design and Commissioning of a Deuterium-Tritium Gas Delivery System for Muon Catalyzed Fusion in a Diamond Anvil Cell
- PDF Optimal scenario design for climate emulation
- PDF An ideal Fermi gas under uniform gravity
- PDF Suppression of ionization stabilization in a driven Morse-Soft-Coulomb system
- PDF Beyond Algorithms: Conceptual Innovation in Medical Imaging AI
- PDF Bivariate incomplete-Bessel kernels for the first nonlinear Vlasov-Maxwell response
- PDF Multi-objective Bayesian optimization of rigid and flexible nozzles for energy-efficient pulsed jet propulsion
- PDF Acceleration of an algebraic multigrid pressure solver using graph neural networks
- PDF Introduction to Quantum Ophthalmology
- PDF Spontaneous parametric down-conversion pumped by spatiotemporal structured light
- PDF Discovering a well-conditioned analytic continuation problem via dictionary learning
- PDF Direct large-area observation of subsurface plastic activity in conditioned copper electrodes
- PDF High-speed electrically driven liquid-crystal compact optical skyrmion encoder
- PDF Controllable Growth and Characterization of α- and β-phase MnSe by Chemical Vapor Deposition
- PDF Equivariant Graph Neural Networks Improve Optical Spectra Prediction for Materials Screening
arXiv Mathematics
- PDF Sparse-dense flight copy-based interactive mechanism to airline integrated with cruise speed control
- PDF Rigorous analysis for the Dirac system on the quarter-plane
- PDF Cohomogeneity one actions on symmetric spaces of mixed type
- PDF Existential Inclusions of Bi-exact Groups are Conjugacy Representation Rigid
- PDF Stability of Khintchine-type inequalities via log-monotonicity
- PDF Norm inflation for the cubic hyperbolic NLS on $\mathbb T^2$
- PDF On two overlooked stick-breaking constructions of the normalized inverse Gaussian process
- PDF Secretary Problem Thresholds and Convergents of $1/e$
- PDF Integrated physics-based modeling reveals a thermodynamic gap in small modular reactor load following
- PDF The Parabolic Harnack Inequality on Weighted Riemannian Manifolds
- PDF Two weight estimates for difference quotients
- PDF Projected Stochastic Gradient Descent with Decision Dependent Distributions: Extended Version
- PDF NeSyCat Torch: A Differentiable Tensor Implementation of Categorical Semantics for Neurosymbolic Learning
- PDF Sequential Fair Allocation and Routing in Nonprofit Operations
- PDF Patnaik-Pearson intrinsic dimension for internal representations of neural networks
arXiv Computer Science
- PDF Zero-Shot Long-Horizon Dexterous Manipulation via Multi-View 3D-Grounded VLM Reasoning
- PDF Native Active Perception as Reasoning for Omni-Modal Understanding
- PDF Beyond the Current Observation: Evaluating Multimodal Large Language Models in Controllable Non-Markov Games
- PDF Learning User Simulators with Turing Rewards
- PDF Freeing the Law with LOCUS: A Local Ordinance Corpus for the United States
- PDF Do as I Do: Dexterous Manipulation Data from Everyday Human Videos
- PDF The Chandra-Gaia Catalog of Counterparts: Resolving ambiguous Gaia matches to X-ray sources in the Chandra Source Catalog using Machine Learning
- PDF UBP2: Uncertainty-Balanced Preference Planning for Efficient Preference-based Reinforcement Learning
- PDF Rethinking Reward Supervision: Rubric-Conditioned Self-Distillation
- PDF Reference-Driven Multi-Speaker Audio Scene Generation from In-the-Wild Priors
- PDF Mean-Payoff-Parity and Lifting Strategies from MDPs to 2-Player Stochastic Games
- PDF Data Intelligence Agents: Interpreting, Modeling, and Querying Enterprise Data via Autonomous Coding Agents
- PDF Explaining Attention with Program Synthesis
- PDF NeuMesh++: Towards Versatile and Efficient Volumetric Editing with Disentangled Neural Mesh-based Implicit Field
- PDF Diffusion-Proof: Recipe for Formal Theorem Proving Beyond Auto-Regressive Generation
arXiv Quantitative Biology
- PDF CollaboratoR: A scalable workflow for collaborative data entry and management
- PDF Retrieval-Based Brain Decoding by Alignment, not Complexity
- PDF Contextualizing Biological Language Models across Modalities via Logit-Space Contrastive Alignment
- PDF scGTN: Deep Siamese Graph Transformer Network for Single-cell RNA Sequencing Clustering
- PDF Can neurons speak? Semantic narration of vision at single-cell resolution
- PDF Effects of spatial environmental noise on evolution of cooperation
- PDF MetaboNet-Bench: A Multi-modal Benchmark for Glucose Forecasting in Type 1 Diabetes
- PDF Adaptive COVID-19 Trajectory Forecasting Using MAB-Inspired Ensemble Weighting
- PDF DART: A design-aware microfluidic chip paradigm for real-time live-cell image analysis
- PDF Bayesian Sampling of Structural Ensembles: The Role of Ensemble-Counting Measures
- PDF Measurement noise limits the advantage of nonlinear models over linear models in biomedical prediction
- PDF MOLAR: Learning Multimodal Molecular Representations from Noisy Labels
- PDF PyPeakRankR: Reproducible Peak-Level Feature Extraction for Regulatory Element Ranking
- PDF Multiscale reconstruction of protein conformations from cryo-EM images
- PDF A nonlinear theory for chemotactic fronts of mixed populations
arXiv Quantitative Finance
- PDF Fitting Accumulated Stock Returns with Tempered Skew t-Distribution
- PDF An extendable, integrated, and dynamic approach to forecasting and stress-testing credit risk
- PDF Collective completeness and pricing-hedging duality II
- PDF Optimal Consumption and Retirement Time under Shortfall Risk Measure
- PDF The Gini-Bayes Connection: The CAP Slope as Bayes' Theorem, with Applications to Weight of Evidence, Somers' $D$, and Calibration
- PDF Conformal Prediction Intervals with Tail-Specific Guarantees
- PDF Continuous-time Optimal Stopping through Deep Reinforcement Learning
- PDF Martingale Doppelgänger-Eval: An Identification Framework for Auditing Candlestick Understanding in Vision-Language Models
- PDF Model Validation of Agentic AI Systems: A POMDP-Based Framework for Belief-State, Forecast, and Policy Validation
- PDF Sharpe Ratio and Return-VaR Ratio Maximization for Option Portfolios with Skew-Elliptical $t$ Underlying Returns
- PDF Beyond the Smile: A Hybrid Convolutional VAE for Crypto Volatility Surfaces
- PDF Crashing Together, Rallying Apart: Dynamic Conditional Tail Dependence in Cryptocurrency Markets
- PDF Expanding the rough Heston model in $H$
- PDF Forward Hedging Reshapes Incentive Provision
- PDF Gaming-Resistant Insurance Contracts for Autonomous AI Agents: Strategy-Proof Toll Mechanism Design