Protein Data Bank
- 3D 10AH: Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 N530D mutant complexed with trans-BAS-2
- 3D 10AI: Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 N530D mutant complexed with cis-BAS-2
- 3D 10BR: Crystal structure of B. burgdorferi HtrA PDZ1-2 domains
- 3D 10HA: Crystal Structure of Honeybee (Apis mellifera) omega class glutathione S-transferase AmGST-O1
- 3D 10HM: Trypanosoma brucei CLK1 kinase domain in complex with a covalent Amidobenzimidazole (AB4) inhibitor
- 3D 10SD: The cryoEM structure of T10 type2 nanofiber
- 3D 10SG: The CryoEM structure of T12 type1 nanofiber
- 3D 10SH: The CryoEM structure of T12 type2 nanofiber
- 3D 11MG: Cryo-EM Structure of Human C3 Pro-Convertase bound to the Compstatin Analog Cp60, TED Conformation 1
- 3D 11MH: Cryo-EM Structure of Human C3 Pro-Convertase bound to the Compstatin Analog Cp60, TED Conformation 2
PDB Nitrogen Cycle
- 3D 12RH: Structure of turkey hemoglobin A covalently bound with epigallocatechin gallate
- 3D 21EJ: Crystal structure of a cupin protein (tm1459, H52A mutant) soaked in CuSO4
- 3D 23UB: Structure of the CYP102A1 Heme Domain with 2-(undecylcarbamoyl)benzoic acid
- 3D 23UH: Structure of the CYP102A1 Heme Domain with 2-(undecylcarbamoyl)benzoic acid and benzene
- 3D 27IL: Crystal structure of Imine Reductase Mutant(R7) from Actinoalloteichus hymeniacidonis in complex with NADPH
- 3D 29OI: AetF, a single-component flavin-dependent tryptophan halogenase, in complex with 8-bromotryptoline
- 3D 9EAX: CRYSTAL STRUCTURE OF THE FMN-BINDING DOMAIN OF HUMAN CYTOCHROME P450 REDUCTASE (MUTANT V164M)
- 3D 9EAY: CRYSTAL STRUCTURE OF THE FMN-BINDING DOMAIN OF HUMAN CYTOCHROME P450 REDUCTASE (MUTANT H183Y)
- 3D 9EAZ: CRYSTAL STRUCTURE OF THE FMN-BINDING DOMAIN OF HUMAN CYTOCHROME P450 REDUCTASE (MUTANT A229T)
- 3D 9EB0: CRYSTAL STRUCTURE OF THE FMN-BINDING DOMAIN OF HUMAN CYTOCHROME P450 REDUCTASE (MUTANT D211N)
PDB Photosynthesis
- 3D 22VL: Cryo-EM structure of Chlamydomonas reinhardtii chloroplast F1Fo-ATP synthase
- 3D 23UB: Structure of the CYP102A1 Heme Domain with 2-(undecylcarbamoyl)benzoic acid
- 3D 23UH: Structure of the CYP102A1 Heme Domain with 2-(undecylcarbamoyl)benzoic acid and benzene
- 3D 27IL: Crystal structure of Imine Reductase Mutant(R7) from Actinoalloteichus hymeniacidonis in complex with NADPH
- 3D 29OI: AetF, a single-component flavin-dependent tryptophan halogenase, in complex with 8-bromotryptoline
- 3D 9EAX: CRYSTAL STRUCTURE OF THE FMN-BINDING DOMAIN OF HUMAN CYTOCHROME P450 REDUCTASE (MUTANT V164M)
- 3D 9EAY: CRYSTAL STRUCTURE OF THE FMN-BINDING DOMAIN OF HUMAN CYTOCHROME P450 REDUCTASE (MUTANT H183Y)
- 3D 9EAZ: CRYSTAL STRUCTURE OF THE FMN-BINDING DOMAIN OF HUMAN CYTOCHROME P450 REDUCTASE (MUTANT A229T)
- 3D 9EB0: CRYSTAL STRUCTURE OF THE FMN-BINDING DOMAIN OF HUMAN CYTOCHROME P450 REDUCTASE (MUTANT D211N)
- 3D 9EB1: CRYSTAL STRUCTURE OF THE FMN-BINDING DOMAIN OF HUMAN CYTOCHROME P450 REDUCTASE (MUTANT T142A)
PDB PFAS Degradation
- 3D 9HLN: Crystal structure of MnmA D100C mutant from Streptococcus pneumoniae with [4Fe-4S] cluster in complex with formate
- 3D 9RFP: Peptidedeformylase XisD in complex with formiate
- 3D 9Q1E: Cryo-EM Structure of the MgtA Tetramer at 2.7 A Resolution
- 3D 9Q6O: Cryo-EM Structure of MgtA in the E2-P State at 2.7 A Resolution
- 3D 9VBQ: Crystal structure of FXR in complex with agonist XJ02862-S2
- 3D 9VBR: Farnesoid X Receptor Agonists_FXR fused with a HD3 peptide
- 3D 9ZLK: Cryo-EM structure of MgtA with bound AMPPCP and magnesium
- 3D 24UU: Crystal structure of Endonuclease IV from Chlamydophila pneumoniae
- 3D 9Z11: Crystal Structure of the Poly(Hexamethylene Adipamide) (Nylon66) Hydrolase Nyl50 in Complex with Butyrate at Room Temperature
- 3D 24HR: Human KRAS G12D (GDP-bound) in complex with macrocyclic peptide inhibitor AP6252
Project Gutenberg
- Adventures of Huckleberry Finn EPUB PDF
- The Time Machine EPUB PDF
- Alice's Adventures in Wonderland EPUB PDF
- Dubliners EPUB PDF
- Thumbelina EPUB PDF
- The Strange Case of Dr. Jekyll and Mr. Hyde EPUB PDF
- Dracula EPUB PDF
- Jane Eyre EPUB PDF
- Siddhartha EPUB PDF
- Persuasion EPUB PDF
- Mansfield Park EPUB PDF
- The Yellow Wallpaper EPUB PDF
- Meditations EPUB PDF
- The Essays of Montaigne EPUB PDF
- Tarzan of the Apes EPUB PDF
GitHub bioRxiv
-
satoshikawato/gbdraw
131
Python
A genome diagram generator for microbes and organelles
-
OlmLab/ZipStrain
11
Python
Official Repository for ZipStrain python package
-
JSONbored/awesome-claude
264
MDX
HeyClaude is a curated registry and distribution surface for Claude and AI-workf...
-
mims-harvard/ToolUniverse
1460
Python
Democratizing AI scientists with ToolUniverse
-
pachterlab/edgePython
79
Python
Repository for edgePython which is a Python implementation of the Bioconductor e...
-
FrangakisLab/ArtiaX
43
Python
ArtiaX is an open-source extension of the molecular visualisation program Chimer...
-
fairdataihub/SODA-for-SPARC
32
JavaScript
Simplifying data curation for researchers funded by the NIH SPARC initiative
-
Huang-lab/fastVEP
99
Rust
fastVEP: High-performance Variant Effect Predictor in Rust
-
Dante-Berth/PhysiGym
11
Python
PhysiGym is a tool for applying reinforcement learning to PhysiCell
-
flyark/AFM-LIS
78
Jupyter Notebook
Local Interaction Score (LIS) for structure prediction analysis
Synthetic Biology
- Tyrosine-sulfated peptide-induced flavonol biosynthesis controls elongation and differentiation in Arabidopsis primary root.
- A glutathione-brassinosteroid-miR156 positive feedback loop becomes gradually attenuated during the vegetative phase change in apple.
- Biosynthesis of the Selenium-Substituted [FeFe]-Hydrogenases.
- Penetrating the cell wall: a review on delivering exogenous materials into plant and fungal cells via micro/nanoinjection.
- Bioactive Seed Coating with Chitosan-Salicylic Acid Networks Activates Folate Metabolism and Nutritional Fortification in Wheat Seedlings.
- Metabolomic characterization and temporal dynamics of Burkholderia cepacia for polyhydroxyalkanoates production from oleic acid.
- Metabolomics reveal drought-stress responses in guayule, a semi-arid rubber crop.
- A chromosome-scale genome assembly of watermelon (Citrullus lanatus cv. 'Mimei') integrates multi-omics data to decipher fruit quality development.
- Transcriptome and metabolome analyses reveal insights into the response of Morchella sextelata mycelia to lethal heat stress.
- Engineering of glycerol-derived aldolase pathway improves D-allulose synthesis in a glucose-glycerol dual-carbon system.
- A Comprehensive Review on Metabolomics-Guided Metabolite Production in Plant Tissue Culture: Integrating Omics and Synthetic Biology for Enhanced Yields.
- Inorganic nanomaterials empowering bacteria: a new paradigm for biomedical applications.
- Genomic evolution of Francisella: metabolic innovation, endosymbiotic transitions to ticks, and biogeographic history.
- Rare functional groups and unique scaffolds in Streptomyces natural products.
- Advances in the discovery and functional analysis of Anti-infective and immunomodulatory natural products from host-associated microbiomes.
Biotechnology
- Clinical Utility of Rapid Whole-Genome Sequencing in Hospitalized Adults With Unexplained Neurologic Presentations.
- Reverse Transcriptase Activity with CRISPR (REACTR) Assay for Rapid and User-Friendly Therapeutic Drug Monitoring in Cytomegalovirus Care.
- Sexually dimorphic mediation of experimental post-traumatic headache by orexin receptor signaling.
- Target RNA-triggered CRISPR-Cas12a2 preferentially cleaves collateral DNA over RNA.
- PLACENTAL AND FETAL RESPONSES TO ADRENOMEDULLIN DEFICIENCY IN THE RAT.
- Protocol to quantify desmoglein 3 tension at cell-cell adhesions using FRET-based tension sensors.
- Restoring the interplay between the endoplasmic reticulum and mitochondria by gene therapy improves Charcot-Marie-Tooth type 2A disease.
- CRISPR/Cas in gynecologic cancers: A review of experimental and therapeutic applications.
- Next-Generation Hepatocyte Expansion: Bridging Molecular Reprogramming with Multicellular Organoids for Clinical Translation.
- A Comprehensive Review on Metabolomics-Guided Metabolite Production in Plant Tissue Culture: Integrating Omics and Synthetic Biology for Enhanced Yields.
- Adeno-associated viral vector purification using a centrifugal microfluidic system: towards workflow automation for low-volume sample processing.
- Dual mode analysis of lead ions in regulation of intestinal flora via split-DNA re-assembly catalyzed colorimetric reaction and trans-cleavage activity of Cas12a/crRNA.
- Genetically engineered outer membrane vesicles as next-generation bionanomaterials for therapeutic and diagnostic applications.
- Photophysical and thermodynamic delineation of binding interactions of anticancer alkaloid chelerythrine towards triplex and duplex DNA structures: a comparative approach.
- A rapid, multiplex, one-pot CRISPR/Dx system for visual detection of influenza A, influenza B, and respiratory syncytial viruses.
AI & Machine Learning
- The psychiatry of sycophancy: When agreeable artificial intelligence becomes a mental health risk.
- Machine-learning-assisted artificial olfactory colorimetric sensor array for bladder cancer early detection from urinary volatile organic compounds.
- Comment on: Multimodal deep learning for predicting postoperative vault and selecting implantable collamer lens sizes using AS-OCT and ultrasound biomicroscopy images.
- Application of Language Models for the Analysis of Adverse Drug Events in Pharmaceutical Research and Development: Scoping Review.
- Implementing Digital Respiratory Technologies for People With Respiratory Conditions: Scoping Review.
- Predicting Frailty Trajectories Using Interpretable Machine Learning Among Older Adults Following Hip Surgery: Prospective Longitudinal Study.
- Network-based analysis of crucial genes for salt tolerance in rice.
- AI-Generated Versus Human Supervisor Feedback on Medical Students' Clinical Clerkship Logs: Cross-Sectional Convergent Mixed Methods Study.
- From association to causation: a decision-aware framework for reproducible biomarker discovery and precision intervention design in the human gut microbiome.
- Cytokine-driven immunogenicity prediction: integrating HLA binding and cytokine induction.
- Online Intervention on Lung Cancer Screening Among High-Risk Individuals: Pilot Intervention Study.
- Delisting From Clinical Improvement in Liver Cirrhosis: A Machine Learning Decision Tree Analysis.
- Deep-Learning Solution Providing Molecular Marker Subtyping of Breast Cancer Whole Slide Images: Protocol for a UK Clinical Service Evaluation Study.
- Deep Learning for Ultrasound-Guided Prostate Biopsy: Toward Automated Targeting and Complication Prediction.
- Web-Based Gamified Auditory-Cognitive Dual-Task Training for Older Adults With Age-Related Hearing Loss: Pilot Randomized Controlled Trial.
Neuroscience
- Spinal afferent endings in the gastrointestinal tract.
- Patient reported outcome measures following group and individual therapy in a multidisciplinary functional/dissociative seizure program.
- Cognitive Aging and Brain Health: A Comparison of Super Movers vs Nonsuper Movers.
- Comment on "Protective Role of CBD Against Nicotine Pouch-Induced Seizure Aggravation and Alterations in Brain Glymphatic Biomarkers".
- Association of Expression of YTH-Domain Family Protein 3 (YTHDF3) With Brain Metastases and Unfavorable Survival in Patients With Stage IV Lung Adenocarcinoma.
- Extracorporeal Cardiopulmonary Resuscitation in the Pediatric Cardiac Catheterization Laboratory: Incidence, Risk Scoring, and Outcomes.
- Epidemiology, seroprevalence, and circulation of Chikungunya virus in Southern Africa (SADC region): A systematic review.
- Outcomes of school-aged children following traumatic brain injury from road traffic accidents in Malaysia: A retrospective study.
- Persistent symptoms, cognitive impairment, and clinical predictors of long COVID one year after Omicron infection: A clinical case-control study from the Faroe Islands.
- Efficacy of a Customized Yoga Therapy Module for Individuals with Early Parkinsonism: A Non-Randomized Controlled Clinical Trial Protocol.
- Genotype-Treatment Correlations in Iranian Children with Congenital Hyperinsulinism: A Single-Center Cohort Study.
- Pollution compounds in human teeth in a Mexican Metropolitan Area.
- Training and transfer effect of evoked brain responses by brain-computer interaction.
- Considerations for the selection and phenotyping of mouse models for the study of Alzheimer's disease.
- Mechanisms of premotor-motor cortex interactions during movement initiation.
Climate Science
- Disruption of macrophyte-induced algal defence by a cyanobacterial competitor through metabolic shifts and microbiome dysbiosis.
- Strategies for carbon reduction and advertising investments in partially centralized supply chains.
- Trends and Regional Variation in Heat-Related EMS Encounters in the US.
- Metabolomic insights into inter-familial and pre-transport treatment effects on live transport stress in selectively-bred mussels, Perna canaliculus.
- Temperature effects on survival and dormancy patterns across age groups in vulnerable land snail Vertigo moulinsiana.
- The environmental impacts of surgical care pathways: same-day-discharge versus enhanced recovery following minimally invasive colectomy and stoma reversal.
- Climate Change and Diabetes Outcomes: Evidence from Climate-Vulnerable Regions.
- Dmitrii Kochkov: Making artificial-intelligence tools to predict what climate change will mean for extreme weather.
- Colin Carlson: Explaining how climate change affects ecological diversity and human health.
- Allie Balter-Kennedy: Exploring ice cores to foresee the effects of climate change.
- Introduction to the Special Issue on climate change: How the sound of the planet reflects the health of the planet.
- Electrocatalytic valorization of waste sulfur-containing species.
- Multiscale impacts of harmful algal blooms and toxins on aquatic ecosystem structure and function: a systematic review.
- Hydraulic failure in Cerrado plants is reduced by plasticity in water loss, not water storage or embolism vulnerability.
- Chagas disease: An increasing clinical concern.
Medicine
- Conserved machinery, divergent functions: evolutionary plasticity of the STK36/ULK4 kinase complex in ciliogenesis and signaling.
- Real-world burden of cardiovascular events following immune checkpoint inhibitor therapy: impact on mortality and treatment resumption in 29,503 patients.
- Moderators of the impact of e-cigarette provision on smoking cessation: secondary analyses from a large naturalistic randomized clinical trial in the US.
- Inhibition of PERK signaling suppresses tumor progression and blocks GP73-GRP78-dependent stromal activation in hepatocellular carcinoma.
- Patient reported outcome measures following group and individual therapy in a multidisciplinary functional/dissociative seizure program.
- Application of Language Models for the Analysis of Adverse Drug Events in Pharmaceutical Research and Development: Scoping Review.
- IARS Emery Brown Award 2026: Anesthetics and Serotonergic Psychedelics May Promote Therapeutic Neuroplasticity by Destabilizing Pathological Neuronal Circuitry.
- Delisting From Clinical Improvement in Liver Cirrhosis: A Machine Learning Decision Tree Analysis.
- Targeting Herpesvirus Recombination Proteins for Antiviral Therapy.
- Shared decision-making, treatment priorities and communication gaps in chronic lymphocytic leukemia: an Israeli national survey.
- Crossroads in Spinal Cord Injury Treatment: A Multidisciplinary Conference at a Pivotal Moment.
- Toxicological and Physiological Responses to Combined Ultrasound and Lipid-Coated ZnO Nanoparticle Exposure in Caenorhabditis elegans.
- Comparing Buprenorphine Treatment Outcomes Among Kentucky Medicaid Patients by Prescriber Specialty and Type.
- Long-Term Outcomes in Antibody-Negative Autoimmune Encephalitis: A Systematic Review and Meta-Analysis.
- Reverse Transcriptase Activity with CRISPR (REACTR) Assay for Rapid and User-Friendly Therapeutic Drug Monitoring in Cytomegalovirus Care.
Genomics
- Empowering multifaceted analysis of spatial transcriptomics data with RGAST.
- Clinical Utility of Rapid Whole-Genome Sequencing in Hospitalized Adults With Unexplained Neurologic Presentations.
- Study protocol on antimicrobial resistance burden, transmission dynamics, and therapeutic bacteriophages in livestock and exposed farming populations in Nagpur, India: An integrated One Health approach.
- A stable subgenomic reporter coronavirus enables transcriptional profiling of bystander cells.
- Bioactive Seed Coating with Chitosan-Salicylic Acid Networks Activates Folate Metabolism and Nutritional Fortification in Wheat Seedlings.
- Phenotypic and genomic characterization of lead tolerance and Pb(II) removal by Klebsiella pneumoniae ST86 EP-L-21.
- Integrative single-cell and spatial transcriptomic analysis reveals that ATG13 enriched in cancer-associated fibroblasts is associated with the suppression of ferroptosis in colorectal cancer.
- Omics technologies in aquafeed: unlocking the black box towards systems biology.
- A chromosome-scale genome assembly of watermelon (Citrullus lanatus cv. 'Mimei') integrates multi-omics data to decipher fruit quality development.
- Genomic diversity and high-risk lineages in clinical Escherichia coli from Mexico.
- Ultrasound-Activatable Piezoelectric Hydrogel Reprograms Mitochondrial Epigenetics for Osteoarthritis Therapy via the mTOR/GATD3A Axis.
- Oat β-Glucan Supplementation Alleviates Dietary AGE-Induced Hepatic Lipid Metabolism Disorder through Transcriptional Regulation and a Proposed Physical Barrier Effect on Intestinal AGE Absorption.
- Single-Nucleus RNA-Seq Reveals Neuroprotective Effects of Acupuncture in Chronic Migraine Through Modulation of Glial Subtypes.
- Genomic evolution of Francisella: metabolic innovation, endosymbiotic transitions to ticks, and biogeographic history.
- Evaluating integrative strategies for incorporating phenotypic features in spatial transcriptomics.
Immunology
- Targeting Herpesvirus Recombination Proteins for Antiviral Therapy.
- Building a Healthier Workforce: The Value of Employer-Sponsored Vaccinations and Vaccination Programs in the Workplace.
- Long-Term Outcomes in Antibody-Negative Autoimmune Encephalitis: A Systematic Review and Meta-Analysis.
- Predictors of COVID-19 vaccination status: a nationwide linkage study in Czechia.
- Tumor-Associated Platelets Suppress T-Cell Function and Promote Immune Evasion in TNBC via the P-selectin/ P-selectin glycoprotein ligand-1 Pathway.
- Development of Glypican-3-Targeting Antibody-Drug Conjugates for Hepatocellular Carcinoma Therapy.
- Mapping the Divergence and Convergence of Mouse and Human Tumor Immunity.
- Elevations in Donor-Derived Cell-Free DNA and Allograft Outcomes in Kidney Transplantation.
- Vaccine management systems with a focus on cold chain management and delivery of immunization services in low- and middle-income countries: A scoping review.
- Understanding factors influencing HPV vaccine uptake among caregivers in Kwara State, Nigeria: A qualitative study.
- Leading from behind the scenes: Community birth attendants, the unsung heroines of childhood vaccination in Ibadan urban slum communities.
- Persistent symptoms, cognitive impairment, and clinical predictors of long COVID one year after Omicron infection: A clinical case-control study from the Faroe Islands.
- Prediction of pre- and postfusion conformations of class I fusion proteins with AlphaFold2.
- Design of Hyperporous Molecularly Imprinted Thin Films for Ultrasensitive Antibody-Free QCM Detection of a Small-Cell Lung Cancer Biomarker.
- Spatial Visual Proteomics: Insights into Tumor Microenvironment Dynamics.
Microbiology
- Disruption of macrophyte-induced algal defence by a cyanobacterial competitor through metabolic shifts and microbiome dysbiosis.
- From association to causation: a decision-aware framework for reproducible biomarker discovery and precision intervention design in the human gut microbiome.
- Bioluminescence Assay for Highly Sensitive Detection of Pathogen DNA Directly from PCR Products via Cell-Free Synthesis of a Fragment of NanoLuc Luciferase.
- Multivalent Display of Antimicrobial Peptides on Plant Virus Scaffolds Enhances Killing of Drug-Resistant Bacteria.
- Psittacine Bird Ophthalmology: A Review of Anatomy, Physiology, Diagnostics, and Interventions.
- Microbiological Profile and Clinical Correlates in Fournier's Gangrene: A Retrospective Single-Center Study.
- Modulation of microbial communication by lipid exudates.
- Microbial metabolites at the front line: Orchestrating gastrointestinal and systemic barrier immunity across the lifespan.
- Canonical EDS1/PAD4 small-molecule binding sites are required for LRR-RP-mediated pattern-triggered immunity.
- Molecular epidemiology and prognostic impact of lower respiratory tract infections during immune checkpoint inhibitor therapy in advanced non-small cell lung cancer: A retrospective cohort study.
- Redefining radiotherapy: the gut as an active target in Immuno-Oncology.
- A stable subgenomic reporter coronavirus enables transcriptional profiling of bystander cells.
- Nutrient utilization and degradative enzyme activity of the dragon fruit canker pathogen, Neoscytalidium dimidiatum.
- Penetrating the cell wall: a review on delivering exogenous materials into plant and fungal cells via micro/nanoinjection.
- Maternal antibody-mediated protection against chicken astrovirus: efficacy of novel inactivated vaccine.
Evolutionary Biology
- Ecological drivers of coexistence and lethal variant evolution in the t haplotype.
- Evolution and the ultimatum game: An agent-based model with interbirth intervals and population structure.
- The evolution of life size Barbie and Ken: Are they any closer to reality?
- Retraction: Constraints on the evolution of toxin-resistant Na,K-ATPases have limited dependence on sequence divergence.
- Manipulating Alkaline Hydrogen Evolution Reaction by Constructing Layered Interfacial Water.
- Phase-Dependent Effects of Fluorine Doping in Cobalt Oxides for Enhanced Oxygen Evolution Reaction Electrocatalysis.
- Spin-Selective Oxygen Evolution in Chiral Molecule-Intercalated Layered Double Hydroxides.
- Evolution of Health-Related Quality of Life Among Migrant Minors in Transit to the United States According to their Socioeconomic Context: An Exploratory Cross-Sectional Study in Mexico.
- Programmed cell death and metastatic evolution in breast cancer: the role of anoikis, necroptosis, and ferroptosis.
- Genomic diversity and high-risk lineages in clinical Escherichia coli from Mexico.
- Accessible and Robust Machine Learning Approaches to Improve the Opsin Genotype-Phenotype Map.
- Armita Manafzadeh: Investigating the shape and evolution of animal joints.
- Culture Power: Humans covered the planet 300 times faster than possible from genetic evolution alone.
- Genomic evolution of Francisella: metabolic innovation, endosymbiotic transitions to ticks, and biogeographic history.
- Low-cost Ni/BaCO(3) composite electrodes via phase transformation for highly efficient alkaline hydrogen evolution.
Molecular Ecology
- Effects of microhabitat construction on water-ecosystem coupling in Urban Rivers: integrated assessment of water quality and biodiversity responses in Beijing, China.
- Ecological context for bacterial natural products discovery.
- ERGA-BGE reference genome of Diadema setosum: the Black Longspine Urchin invading the Mediterranean sea.
- Making conservation inclusive and count through globally important agricultural heritage systems as possible other effective area-based conservation measures.
- Decoding common and rare noncoding variant effects across cellular and developmental contexts.
- Anthropogenic accessibility and observer inequality dictate spatial biodiversity patterns in Malaysia.
- Timber harvesting intensity and use of decision-support tools among semi-professional private forest owners: a Norwegian case study.
- DNA-based identification uncovers the illegal trade of sea cucumbers from Brazil.
- Geographic distance and climate-mediated landscape resistance explain the genetic differentiation of Rhopalus sapporensis across China.
- The digital biodiversity revolution.
- Seasonal variation of fish biodiversity in Xisha Islands based on dual-marker eDNA metabarcoding.
- Application of environmental DNA technology in monitoring species diversity at multiple biological groups in marine protected area.
- Seasonal Phytochemical Profiling and Chemometric Assessment of Crataegus songarica K. Koch: Implications for Bioactivity and Resource Utilization.
- The global diversity and decline of glacier animals.
- The diversity of soil parasitic protists shapes ecosystem stability worldwide.
arXiv Physics
- PDF Milestoning Markov-jump dynamics: Stationary properties, thermodynamic consistency, kinetic hysteresis, and fluctuation symmetries
- PDF Distributed Acoustic Sensing for Urban Monitoring: Coverage Thresholds and Percolation
- PDF Hydrogen Chemisorption and Current-Induced Spin Polarization on NbP
- PDF Deterministic single-photon sources in hexagonal boron nitride with electron-dose-tuned purity and reversible thermal quenching
- PDF Coherent control of orthogonal continuum states in XUV photoionization
- PDF Transverse Modulation of Continuous Electron Beams by a Structured Optical Cavity
- PDF Latent space mapping of interpretable structural coordinates from stochastic single-molecule signals
- PDF Counterdiabatic Raman Atom Optics for Compact High-Sensitivity Gravimetry
- PDF Edge-Enhanced Diffractive Neural Networks Based on Spin-Multiplexed Nonlocal Metasurfaces
- PDF Experimental quantum state learning with pairs of photons
- PDF A Scalable All-to-All Reconfigurable Ising Solver Using Pulsed Time-Division Multiplexing
- PDF Coupled Flexural Optomechanical Cavities with Engineered Nanomechanical Interconnects
- PDF The Winner Takes It All
- PDF Morphology-resolved scrambling in a chaotic quantum billiard
- PDF Studies of Neutrino-Nucleus Elastic Scattering with Point-Contact Germanium Detectors at the Kuo-Sheng Reactor Neutrino Laboratory
arXiv Mathematics
- PDF Nitsche-based FEM for the Laplace eigenvalue problem: spectral approximation and a posteriori error analysis
- PDF A constant-factor approximation of the Gromov-Hausdorff distance in the plane
- PDF Optimal Bounded Thrust Powered Descent with Analytical Ground-Collision Avoidance
- PDF Existentially closed fields with operators in various categories
- PDF Effective Intrinsic Ergodicity for renewal-type potentials on S-gap shifts
- PDF Reconstruction of time-dependent coefficients in a semilinear dynamical Schr{ö}dinger equation
- PDF Learning the Geometry of Data: A Mathematical Review of Shape Space Analysis
- PDF The exact value of the Ramsey number $R(K_4-e,K_7)$
- PDF Symmetric Extension Complexity of the Spanning Tree Polytope
- PDF Uniqueness of the blow-up for some Alt-Phillips cones
- PDF Filtered Conformal Ellipsoids for Graph-Native Time Series
- PDF Exploding and vanishing gradients in deep neural networks: the effect of residual connections
- PDF Mathematical Analysis of Subwavelength Resonances and Gradient Blow-up for Two Close-to-Touching Inclusions within the Two-Dimensional Elasticity
- PDF The Complexity of Min-Max Optimization for Quadratic Polynomials
- PDF Bounds for Genus Zero Gromov-Witten Invariants
arXiv Computer Science
- PDF The Value Axis: Language Models Encode Whether They're on the Right Track
- PDF T-Rex: Tactile-Reactive Dexterous Manipulation
- PDF Human Universal Grasping
- PDF Context-Aware RL for Agentic and Multimodal LLMs
- PDF A constant-factor approximation of the Gromov-Hausdorff distance in the plane
- PDF BRDFusion: Physics Meets Generation for Urban Scene Inverse Rendering
- PDF Exact Posterior Score Estimation for Solving Linear Inverse Problems
- PDF Geometric Action Model for Robot Policy Learning
- PDF Hierarchical Advantage Weighting for Online RL Fine-Tuning of VLAs from Sparse Episode Outcomes
- PDF Benchmarking LLM Agents on Meta-Analysis Articles from Nature Portfolio
- PDF R2RDreamer: 3D-aware Data Augmentation for Spatially-generalized 2D Manipulation Policies
- PDF The Importance of Phase in Neural Representations: An Internal Oppenheim-Lim Test of Image Classifiers
- PDF Your Privacy My Cloak: Backdoor Attacks on Differentially Private Federated Learning
- PDF KVEraser: Learning to Steer KV Cache for Efficient Localized Context Erasing
- PDF Qwen-RobotWorld Technical Report: Unifying Embodied World Modeling through Language-Conditioned Video Generation
arXiv Quantitative Biology
- PDF Latent space mapping of interpretable structural coordinates from stochastic single-molecule signals
- PDF Cell Division Changes Fate Decisions in a Genetic Toggle Switch
- PDF Too Few or Too Many? Sample Size Estimation for Differential Abundance Studies
- PDF Adaptive inference and function vectors in deep transformers
- PDF Learning Hybrid Biophysical Neuron Models with Neural ODEs
- PDF Oscillating concentrations suppress condensate coarsening
- PDF Infant Spontaneous Movement Noise Improves Exploration in Deep RL
- PDF MultiMolecule: a modular ecosystem for biomolecular sequence-model workflows
- PDF How Post-Training Shapes Biological Reasoning Models
- PDF Extended Kalman Filter-Based State Estimation for a Nine-Compartment Nonlinear Epidemic Model -- Convergence Analysis and In-Silico Benchmark Calibrated on the COVID-19 Third Wave in Italy
- PDF Sex-based Network-Specific Differences in Connectomes: A Krakencoder-Based Analysis
- PDF Circuit Tracing in Autoregressive Protein Language Models
- PDF EEGDash: An open-source platform for machine learning on public neurophysiological data
- PDF Task-guided cross-subject latent alignment: a multi-encoder-decoder VAE
- PDF What is Life?
arXiv Quantitative Finance
- PDF Sharpe Ratio and Return-VaR Ratio Maximization for Option Portfolios with Skew-Elliptical $t$ Underlying Returns
- PDF Beyond the Smile: A Hybrid Convolutional VAE for Crypto Volatility Surfaces
- PDF Crashing Together, Rallying Apart: Dynamic Conditional Tail Dependence in Cryptocurrency Markets
- PDF Expanding the rough Heston model in $H$
- PDF Forward Hedging Reshapes Incentive Provision
- PDF Gaming-Resistant Insurance Contracts for Autonomous AI Agents: Strategy-Proof Toll Mechanism Design
- PDF Revisiting Trade-sign Long-memory and Square-root Law price impact
- PDF A Multiplex Network Hawkes Model for Systemic Risk Measurement
- PDF Trading in the Sunshine or in the Shade: Market Impact and Adverse Selection on Hyperliquid
- PDF Robust Transformer-Based One-Step Stock Index Forecasting via Shifted Data Augmentation
- PDF Fast, Reliable, and Error-Bounded Option Pricing with Pretrained Neural Networks: A GJR--GARCH Study
- PDF Belief at Risk: Quantifying Agentic AI Model Risk with LLM-Inferred Bayesian State Filters
- PDF PHINN: Persistent Homology Inspired Neural Network for Rare-Event Time Series Generation
- PDF A Machine-Checked Itô Calculus for Brownian Motion
- PDF Pricing Excess-of-Loss Reinsurance and CAT Bonds under Climate Uncertainty: A Cox Process Framework with Temperature-Dependent Stochastic Intensity