News
- Death of Rohingya refugee left in parking lot by US border agents ruled a homicide [The Guardian World]
- Magnitude 7.4 quake hits off Indonesia’s Ternate, tsunami warning lifted [Al Jazeera]
- Magnitude 7.4 earthquake strikes in Indonesia, sparking tsunami alert [The Guardian World]
- Penny Wong to join talks with 35 countries, excluding US, to explore ways to reopen strait of Hormuz [The Guardian World]
- FBI agents from US arrive in Cuba to probe lethal speedboat shooting [Al Jazeera]
- What to watch as Trump addresses the nation about the Iran war [AP News]
- DHS boss rescinds restrictive $100,000 approval process, giving hope to FEMA relief efforts [AP News]
- First troops from UN-backed Gang Suppression Force arrive in Haiti [Al Jazeera]
- Watch the moment Artemis II launches historic mission around the moon [Al Jazeera]
- Watch the moment Artemis II blasts into space [BBC World]
- NASA successfully launches historic Artemis II moon mission [Al Jazeera]
- Utah teen identified as victim of serial killer Ted Bundy [BBC World]
- US removes sanctions on Venezuela’s interim President Delcy Rodriguez [Al Jazeera]
- US Supreme Court appears sceptical of US birthright citizenship challenge [BBC World]
US News
- NYU closes Abu Dhabi campus amid Iranian strike threats [The Hill]
- Israel support takes center stage in New Jersey House candidate debate [The Hill]
- Return to the moon driven by courage and curiosity [CBS News]
- 7-month-old baby in stroller shot and killed in Brooklyn [CBS News]
- Man charged in connection with some of 'Texas Killing Fields' deaths [ABC News]
- Huge crowds gather to watch Artemis II launch [CBS News]
- Artemis II launches, sending NASA astronauts on historic mission around the moon [CBS News]
- CDC pauses dozens of types of lab testing during evaluation and in wake of downsizing [ABC News]
- Explosion that killed LA County deputies involved serious safety violations [ABC News]
- Baby killed by a stray bullet after drive-by attack in Brooklyn, police say [ABC News]
- Mark Warner slams Trump’s NATO threat [The Hill]
- NATO’s Rutte schedules Washington trip as Trump reevaluates alliance [The Hill]
- 4/1: CBS Evening News [CBS News]
- Iranian president leaves door open to diplomacy in open letter to US [The Hill]
- FDA’s Makary touts ‘healing’ following DOGE cuts [The Hill]
- Watch live: Trump addresses nation on Iran operation [The Hill]
- Americans say this is their "magic number" to retire comfortably [CBS News]
- 5 takeaways from Trump’s birthright citizenship arguments [The Hill]
- New DNA testing links unsolved death of Utah teen in 1974 to serial killer Ted Bundy, sheriff says [ABC News]
- Judge tosses lawsuit filed by parents of 'Cop City' protester who was killed by troopers [ABC News]
EU News
Tech
- California Suspends Enforcement of Law Requiring VCs to Report Diversity Data [Wired]
- Trump’s birthright citizenship ban may fail — but the administration already got too far [The Verge]
- A new C++ back end for ocamlc [Hacker News]
- IPv6 address, as a sentence you can remember [Hacker News]
- NASA Launches Artemis II Astronauts Around the Moon [Slashdot]
- De-fi platform Drift suspends deposits and withdrawals after millions in crypto stolen in hack [TechCrunch]
- NASA launches four astronauts toward the Moon on the Artemis II mission [The Verge]
- SolveSpace (open source 2D/3D CAD) working on Windows 2000 (2025) [Hacker News]
- The Windows equivalents of the most used Linux commands [Hacker News]
- Google's TurboQuant saves memory, but won't save us from DRAM-pricing hell [The Register]
- Anthropic took down thousands of GitHub repos trying to yank its leaked source code — a move the company says was an accident [TechCrunch]
- UFC-Que Choisir Takes Ubisoft To French Court Over the Crew Shutdown [Slashdot]
- 'Uncle Larry’s biggest fan' cut by email in early morning Oracle layoff spree [The Register]
- DRAM pricing is killing the hobbyist SBC market [Hacker News]
- Show HN: Dull – Instagram Without Reels, YouTube Without Shorts (iOS) [Hacker News]
- SpaceX files to go public [Hacker News]
- Live: Artemis II Launch Day Updates [Hacker News]
Business
- Globalstar stock surges 15% on report Amazon is weighing an acquisition [CNBC]
- Leveraged SK Hynix ETF Tops Global Inflows Over Tesla, Microsoft [Bloomberg]
- Japan Credit Pipeline Slows as Investors Grapple With Volatility [Bloomberg]
- Australian State Triggers Emergency Powers Amid Fuel Crisis [Bloomberg]
- Feud between Two Sigma founders continues to plague fund [Financial Times]
- Fuel Prices for UK Motorists Rose by Record in March on Iran War [Bloomberg]
- Tesla’s delivery update is on deck. Why investors shouldn’t abandon an ‘unwavering belief’ in EVs. [MarketWatch]
- Korea Offshore Bond Sales Jump to $24 Billion as Maturities Loom [Bloomberg]
- FTSE Review Looms for Vietnam Stocks as Foreign Outflows Persist [Bloomberg]
- Pop Mart Suffers $33 Billion Rout as Labubu Craze Unravels [Bloomberg]
- Trump admin tells Supreme Court birth tourism is evidence birthright citizenship needs to end [CNBC]
- Jim Cramer warns rally lacks real leadership as AI-driven gains fail to inspire confidence [CNBC]
- Amazon in talks to buy $9bn satellite group Globalstar in bid to rival Musk’s Starlink [Financial Times]
- Oil Jumps on Trump’s War Threat, Stock Rally Fades: Markets Wrap [Bloomberg]
- Gold Falls as Trump Gives Mixed Signals on Iran War Resolution [Bloomberg]
- Fired via email? Some of the 30,000 workers cut by Oracle woke up to a morning message saying they were laid off. [MarketWatch]
- Oil Jumps as Trump Threatens War Escalation Over Coming Weeks [Bloomberg]
- “Liberation Day” has reshaped trade—but not as Donald Trump hoped [The Economist]
- Can a country get too rich? [The Economist]
Science
- Study suggests people are losing 338 spoken words every year and have been for at least 15 years [Phys.org]
- Researchers present first fossilized 'emperor' butterfly [Phys.org]
- Thirty previously unpublished verses by Empedocles discovered on a papyrus from Cairo [Phys.org]
- Reducing aircraft soot might not actually reduce the climate effects of contrails [Phys.org]
- World's largest quantum circuit simulation for quantum chemistry achieved on 1,024 GPUs [Phys.org]
- Lakes forming next to Greenland's melting ice sheet are speeding up glacier flow [Phys.org]
- Oregano, rosemary and 'time': Long-term swine study shows natural-compound benefits [Phys.org]
- Artemis II blasts off: Humans are on their way back to the moon [Live Science]
- Stretching metals can tune catalysis: A new method predicts energy shifts [Phys.org]
- Study finds some dark web users share traits with those involved in crime [Phys.org]
- Chaos shapes how meandering rivers change over time, research shows [Phys.org]
- Fins, fingers and toes: A new take on repeating body parts and how they come to be [Phys.org]
- Virus-inspired DNA needle could pave the way for better medicines [Phys.org]
- New model shows how behavioral flexibility affects animal evolution [Phys.org]
- Aquaculture is shifting toward less sustainable species, study says [Phys.org]
- Precision work prior to cell division: How enzymes optimize DNA structure [Phys.org]
- Historic Artemis II launch sends astronauts bound for the moon [New Scientist]
- Tobacco plant altered to produce five psychedelic drugs [New Scientist]
- Stark photos show quest for profit cutting swathes through the Amazon [New Scientist]
- The Iran war is exposing the huge risks in our food system [New Scientist]
Space
- Liftoff! NASA Launches Astronauts on Historic Artemis Moon Mission [NASA]
- NASA launches 4 astronauts to the moon on historic Artemis 2 voyage, a lunar leap for the 21st century [Space.com]
- Artemis 2 launches on first human mission to the moon in more than 50 years [SpaceNews]
- Artemis II mission begins [ESA]
- Research roundup: 7 cool science stories we almost missed [Ars Technica Space]
- LIGO data hints at supernovae so powerful they leave nothing behind [Ars Technica Space]
- Sweden goes back to basics, swapping screens for books in the classroom [Ars Technica Space]
- Launch day has arrived for NASA's Artemis II mission—here's what to expect [Ars Technica Space]
- NASA is leading the way to the Moon, but the military won't be far behind [Ars Technica Space]
- Live coverage: NASA to launch Artemis 2, its first Moon-bound mission with astronauts since 1972 [Spaceflight Now]
Biotech
Asia
- Magnitude 7.4 earthquake strikes off Indonesia [Japan Times]
- NASA launches four astronauts on world's first crewed lunar mission in half a century [Channel News Asia]
- NASA astronauts bound for moon in landmark return mission [Japan Times]
- JB food guide: Railway-themed briyani and seafront treats in Stulang Laut [Channel News Asia]
- At least 1 dead as 7.4-magnitude quake hits eastern Indonesia; tsunami warning lifted after 2 hours [The Straits Times]
- Philippines Holds Talks With Iran on Safe Passage Through Strait of Hormuz [The Diplomat]
- US embarks on world’s first crewed moon mission in decades amid race with China [South China Morning Post]
- New Zealand signs Cook Islands agreement to counter China deal [The Straits Times]
- DNA links serial killer Ted Bundy to unsolved murder of teen girl [South China Morning Post]
- Babies evacuated from Gaza two years ago returned to their overjoyed parents [Japan Times]
- U.S. Supreme Court justices skeptical of Trump order to restrict birthright citizenship [Japan Times]
- World-first work-from-home laws threaten Melbourne’s economy [Japan Times]
- A war meant to break Iran could leave Tehran stronger, and Gulf exposed [Japan Times]
- Luxon appoints Penk to lead New Zealand defence in Wellington reshuffle [The Straits Times]
- Eyes on Chinese airline regulator as it seeks difficult balance on fuel surcharge rises [South China Morning Post]
- The Iran vs US-Israel war and the end of the unipolar moment [Asia Times]
- When Trump Goes to China: It’s the Strategy That Matters [The Diplomat]
- Pakistan’s Economic Stabilization Efforts Face Their Biggest Challenge With Iran War [The Diplomat]
India
- J&K Assembly admits Bill on reversing amendments made to Land Grants Act by L-G in 2022 [The Hindu]
- Panchayati Raj, local body elections in Rajasthan set to get delayed [The Hindu]
- AIADMK promises to make Tamil Nadu free from drugs [Hindustan Times]
- M.P. Congress MLA convicted in fraud case; likely to lose legislative membership [The Hindu]
- DMK thwarted BJP’s attempts to orchestrate riots in Tamil Nadu: Stalin [Hindustan Times]
- HT interview: Congress is a feeder organisation of BJP, says CPI(M)’s MA Baby [Hindustan Times]
- 15 years of Game of Thrones: Daenerys, Jon return in new ‘Reign of Thrones’ trailer [Times of India]
- At least two Trinamool candidates summoned by central investigating agencies ahead of polls [The Hindu]
- Dallas Cowboys and Kansas City Chiefs linked in bold first-round draft shake-up [Times of India]
- Sooryavanshi's India debut loading? Zimbabwe series raises big question [Times of India]
- Delhi Government, IARI to work together to improve soil health, expand green cover [The Hindu]
- ‘No enmity toward Americans’: Iranian President’s open letter to the US as tensions escalate [Mint]
- NASA successfully launches Artemis II: Four astronauts embark on historic 10-day lunar flyby [Mint]
- Delhi court dismiss defamation case filed by wife of AAP’s Somnath Bharti against Nirmala Sitharaman [The Hindu]
- Watch: Nasa launches Artemis II, 1st crewed lunar mission in half a century [Times of India]
- Luigi Mangione's state murder trial delayed until September, throwing federal trial into question [Hindustan Times]
- Celtics vs Heat injury update: Who's playing, injured, team stats, and more [Times of India]
- T.N. Assembly election: Residents weigh infrastructure upgrades against many long-standing civic problems [The Hindu]
- 51% of CCTVs China-made, Delhi plans phased removal over security concerns [Times of India]
- Bad heir day: Son robs his father of Rs 10 lakh at gunpoint in Delhi, unmasked [Times of India]
Middle East
- Fuel prices surge in Somalia and Tanzania amid supply disruption [Middle East Eye]
- PMF says strike on Tal Afar brigade killed commander, wounded four [Middle East Eye]
South America
- Astronauts blast off for historic 'Artemis II' US lunar journey [Buenos Aires Times]
- Stories that caught our eye: March 27 to April 1 [Buenos Aires Times]
- Benfica winger Gianluca Prestianni denies 'ugly' racism claims [Buenos Aires Times]
- Milei’s peso bucks EM losses on shale, agriculture boom [Buenos Aires Times]
- Cofco books first Argentina corn cargo to China in over 15 tears [Buenos Aires Times]
- Colombia’s Central Bank serves who exactly? [Colombia Reports]
- Small Santa Fe town in shock after 13-year-old killed in school shooting attack [Buenos Aires Times]
- Brazilian court allows Argentine lawyer accused of racism to return home [Buenos Aires Times]
- Anaesthetist’s death in Argentina sparks police probe into secret stolen drug parties [Buenos Aires Times]
- Albiceleste win with ease – and learn little – in final pre-World Cup home friendlies [Buenos Aires Times]
- (Ayn?) Rand Paul’s libertarian fest [Buenos Aires Times]
- YPF shares soar to 15-year high on Wall Street after court ruling [Buenos Aires Times]
- Messi on target as Argentina put five past Zambia in World Cup send-off [Buenos Aires Times]
- Argentina designates Iran’s Revolutionary Guards a terrorist organisation [Buenos Aires Times]
Australia
- Storm forward leaves hospital after suffering suspected stroke [ABC Australia]
- What’s the main take away from Anthony Albanese’s address to the nation? | Fiona Katauskas [The Guardian Australia]
- DNA links US serial killer Ted Bundy to unsolved 1974 murder [ABC Australia]
- Donald Trump, man-baby leader of the free world, is having an epic tantrum. Anthony Albanese must call it out | Paul Daley [The Guardian Australia]
- Woods turns down Ryder Cup captaincy as he seeks treatment outside of US [ABC Australia]
- How to nurture your non-work identity [ABC Australia]
- How kids are connecting to country in one of Australia's most isolated communities [ABC Australia]
- Matildas face off as Arsenal ends Chelsea's Champions League run [ABC Australia]
- New Zealand’s highest-paid CEOs: $17m payday smashes records [NZ Herald]
UK News
- The Papers: 'Trump goes to war on Nato' and 'Scott breaks silence' [BBC UK]
- Doctors lose new jobs package as strike to go ahead [BBC UK]
- New laws to make it easier to cancel subscriptions [BBC UK]
- Motability drivers 'horrified' by compulsory black-box trackers [BBC UK]
- 'We entered Race Across the World to honour dying wish' [BBC UK]
- The delicate question of where responsibility lies for safety on our mountains [BBC UK]
- GCSE results 'too late' to judge quality of education, report says [BBC UK]
- Teacher given six-figure payout after pupil threw a toaster at them, shock union report reveals [The Independent]
- Mother who lost sight after birth has vision restored [Sky News]
- Almost 22 million cars set to hit UK roads despite surge in fuel prices as Easter getaway begins [The Independent]
- UK drivers hit with record monthly increase in fuel prices sparked by Iran war [The Independent]
- UK social media users less active on tech platforms due to rise of video apps [The Guardian UK]
- 'We look at life differently' - the over-70s making their comedy debut [BBC UK]
- Warm clothing handed out to detainees in cold court custody cells [BBC UK]
- Resident doctors lose jobs package and will strike next week [Sky News]
- Jeremy Hunt: Let mums with cancer delay maternity leave [Sky News]
- Watch: Carol Kirkwood's funniest moments on air [BBC UK]
- The brilliant students the UK doesn’t want - podcast [The Guardian UK]
Top Journals
- Shisha tobacco’s availability is rising. Why does UK smoking policy fail to tackle it? [BMJ]
- Clinical Examination of the Lumbar Spine [NEJM]
- Liver Transplantation in Alcohol-Related Liver Disease [NEJM]
- Minocycline-Induced Hyperpigmentation [NEJM]
- Too Much of a Good Thing [NEJM]
- More Options for Gene Editing in Hemoglobinopathies [NEJM]
- Trastuzumab Deruxtecan in Residual HER2-Positive Early Breast Cancer [NEJM]
- The Fetal-to-Adult Hemoglobin Switch — Mechanism and Therapy [NEJM]
- Simulating and Teaching the Physiology of Pulsus Paradoxus [NEJM]
- Digital Twin–Guided Ablation for Ventricular Tachycardia [NEJM]
- Functional Dyspepsia [NEJM]
- Pemphigus Foliaceus [NEJM]
- GLP-1 Receptor Agonists [NEJM]
- CRISPR-Cas12a Gene Editing of HBG1 and HBG2 Promoters to Treat β-Thalassemia [NEJM]
- CRISPR-Cas12a Gene Editing of HBG1 and HBG2 Promoters to Treat Sickle Cell Disease [NEJM]
- Base Editing of HBG1 and HBG2 Promoters for Sickle Cell Disease [NEJM]
- Prokaryotic bias in surface ocean particles [PNAS]
- Dynamic switching of cell–substrate contact sites allows gliding diatoms to modulate the curvature of their paths [PNAS]
- On the potential for strategic behavior in jurisdictional REDD+ [PNAS]
- Hierarchical genotype networks and incipient ecological speciation in Q[math] phage quasispecies [PNAS]
Long Reads
- Want to be a citizen scientist? Here are 5 ways to get involved [The Conversation]
- Why Doesn’t Anybody Realize We’re Going Back to the Moon? [The Atlantic]
- The unseen challenges of life on the Moon [The Conversation]
- Bigger storms, more often: new study projects likely future rainfall impacts on NZ [The Conversation]
- How Sleep Cleans the Brain [Nautilus]
- Opposing ICE Might Save the Country. It Could Also Ruin Your Life. [Longreads]
- The Best Books of 2026 So Far [The New Yorker]
- Gillian Welch: This Land is Her Land [Longreads]
- The California Novel No One Can Find [Longreads]
- The Medici’s lost garden of wonders [Aeon]
- The Longreads Questionnaire, Featuring R. O. Kwon [Longreads]
Protein Data Bank
- 3D 10HY: Structure of CHK1 10-pt. mutant complex with macrocyclic LRRK2 inhibitor compound 1 ((11R)-8-chloro-3,11-dimethyl-2-(oxan-4-yl)-2,4,10,11,12,13-hex...
- 3D 10HZ: Structure of CHK1 10-pt. mutant complex with macrocyclic LRRK2 inhibitor compound 7 ((10aS,13aS)-3-cyclobutyl-1-methyl-8-(trifluoromethyl)-3,4,10a,...
- 3D 10IA: Structure of CHK1 10-pt. mutant complex with macrocyclic LRRK2 inhibitor compound 12 ((10aS,13aS)-3-cyclopropyl-1-methyl-8-(trifluoromethyl)-3,4,10...
- 3D 10NM: CRYO-EM STRUCTURE OF THE A149T DIMER VARIANT OF SERINE HYDROXYMETHYLTRANSFERASE 8 FROM SOYBEAN CULTIVAR ESSEX IN COMPLEX WITH PLP
- 3D 11BP: The cryo-EM structure of Pakpunavirus P7-1 empty particle neck (portal:H-t-T)
- 3D 11BQ: Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)
- 3D 11DG: Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)
- 3D 11FV: Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)
- 3D 11GG: Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)
- 3D 11KC: Cryo-EM determined structure of designed nanoparticle O43-TM
PDB Nitrogen Cycle
- 3D 11NA: Azotobacter vinelandii MoFeP (C1 symmetry) determined using the SPT Labtech chameleon in the presence of 0x SurfACT
- 3D 11NB: Azotobacter vinelandii MoFeP (C2 symmetry) determined using the SPT Labtech chameleon in the presence of 0x SurfACT
- 3D 11NC: Azotobacter vinelandii MoFeP (C1 symmetry) determined using the SPT Labtech chameleon in the presence of 0.25x SurfACT
- 3D 11ND: Azotobacter vinelandii MoFeP (C2 symmetry) determined using the SPT Labtech chameleon in the presence of 0.25x SurfACT
- 3D 11NE: Azotobacter vinelandii MoFeP (C1 symmetry) determined using the SPT Labtech chameleon in the presence of 1x SurfACT
- 3D 11NF: Azotobacter vinelandii MoFeP (C2 symmetry) determined using the SPT Labtech chameleon in the presence of 1x SurfACT
- 3D 21JI: Crystal structure of isoprimeverose-producing enzyme from Phaeoacremonium minimum
- 3D 9DSK: Crystal structure of the cow antibody 115
- 3D 9QLJ: Crystal Structure of a Disordered Apo-form of A. Fischeri FNR
- 3D 9QLK: Structure of piperazate synthase from Streptomyces sp.
PDB Photosynthesis
- 3D 11BQ: Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)
- 3D 11DG: Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)
- 3D 11FV: Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)
- 3D 11GG: Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)
- 3D 9AAL: Pennycress biotin carboxylase tetramer integrative model
- 3D 9O49: Cryo-EM structure of Rubisco with hetero small subunit 1A3B form I
- 3D 9O4C: Cryo-EM structure of Rubisco with hetero small subunit 1A3B form II
- 3D 9QIS: CO-bound [FeFe]-hydrogenase from Nitratidesulfovibrio vulgaris
- 3D 9QOH: Mouse Ribosome POST translocation state
- 3D 9RC7: Crystal structure of Gilliamella bombicola lactate deydrogenase (GbLDH)
PDB PFAS Degradation
- 3D 9MQM: Cryo-EM structure of a membrane transport protein
- 3D 9NHZ: Cryo-EM structure of a membrane transport protein
- 3D 9U9L: Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - Trp185Tyr/His280Ala with 2-fluoro-3-phenylpropanoic acid
- 3D 9ZWK: High-resolution cryo-EM structure of KdpFABC in the E1 state in lipid nanodisc
- 3D 9ZWL: High-resolution cryo-EM structure of KdpFABC in the E1-ATP state in lipid nanodisc
- 3D 9ZWM: High-resolution cryo-EM structure of KdpFABC in the E1P state in lipid nanodisc
- 3D 9ZWN: High-resolution cryo-EM structure of KdpFABC in the E2P state in lipid nanodisc
- 3D 9ZWO: High-resolution cryo-EM structure of KdpFABC in the E2 state in lipid nanodisc
- 3D 10JX: Crystal structure of heme binding PAS domain from one component transcription factor, FG214
- 3D 10JY: Crystal structure of heme binding PAS domain from one component transcription factor, FG214 reduced with dithionite
Project Gutenberg
- A Princess of Mars EPUB PDF
- Peter Pan EPUB PDF
- A Christmas Carol EPUB PDF
- The Hunchback of Notre Dame EPUB PDF
- The Kama Sutra EPUB PDF
- Treasure Island EPUB PDF
- Tarzan of the Apes EPUB PDF
- Dracula EPUB PDF
- Crime and Punishment EPUB PDF
- Anthem EPUB PDF
- David Copperfield EPUB PDF
- A Tale of Two Cities EPUB PDF
- The Complete Poetical Works of Percy Bysshe Shelley EPUB PDF
- Wuthering Heights EPUB PDF
- Hamlet EPUB PDF
GitHub bioRxiv
-
anthropics/knowledge-work-plugins
11045
Python
Open source repository of plugins primarily intended for knowledge workers to us...
-
Zhaojp-Frank/AwesomePaper-for-AI
13
Unknown
Awesome system papers for AI
-
EMOD-Hub/EMOD
105
C
Source files for building the IDM EMOD disease transmission model.
-
marcpinet/citracer
6
Python
💬 Trace citation chains for any keyword across research papers and render them a...
-
jhuapl-bio/taxtriage
66
Python
TaxTriage is a Nextflow workflow designed to agnostically identify and classify ...
-
tbrowne5/crisprHAL
10
Python
Generalizable Cas9/sgRNA prediction models for multiple Cas9 variants
-
stephenslab/susieR
252
R
R package for "sum of single effects" regression.
-
pachterlab/edgePython
61
Python
Repository for edgePython which is a Python implementation of the Bioconductor e...
-
openvax/vaxrank
62
Python
Ranked vaccine peptides for personalized cancer immunotherapy
-
uhlerlab/spatialfusion
10
Jupyter Notebook
This repository contains the package SpatialFusion, a deep-learning multimodal m...
Synthetic Biology
- Integrated metatranscriptomic and metabolomic analyses reveal microbial succession and flavor formation pathways driven by distinct vinification strategies.
- Discovery of Aromatic Meroterpenoids with Potent Anti-biofilm Activity and Genome-Guided Identification of Two Prenyltransferases.
- The BnTFL1-BnJAM3-BnSWEETs Module Orchestrates Seed Storage Reserve Accumulation in Brassica napus.
- Unlocking the Phyllosphere's Role: Selenium Nanoparticles Reprogram Sulfur Metabolism and Enrich Sphingomonas to Reduce Cadmium in Wheat.
- Role of hemopexin in protoporphyrin IX distribution and cholestatic liver injury.
- Blue light regulates terpenoid biosynthesis via jasmonic acid signaling in the medicinal plant Andrographis paniculata.
- An acetyltransferase family required for biosynthesis of diverse marine carotenoids.
- Elucidating the role of YlMDH2 in temperature-dependent mannitol biosynthesis in Yarrowia lipolytica via integrative multi-omics and structural analysis.
- Biosynthesis and antibacterial activity of selenium nanoparticles using Pseudomonas aeruginosa and Bacillus pumilus RMO6.
- Natural Food Pigments: From Biosynthesis to Application.
- Identification and characterization of two novel Acinetobacter species capable of degrading polyester.
- Exploratory Study of Virulence Factors and Protein-Protein Interaction Networks in Major Oral Pathogens.
- Identification of candidate genes for malic acid content in tomato fruits and development of associated SNP markers.
- Melatonin promotes stomatal immunity by mediating phytohormone crosstalk in Arabidopsis thaliana.
- Specialized pro-resolving mediators in myocardial infarction: orchestrators of inflammation resolution and tissue repair.
Biotechnology
- AB-1002 gene therapy expressing active protein phosphatase inhibitor-1 in heart failure: Rationale and study design of the GenePHIT trial.
- CRISPR/Cas13a: Compensatory Target Activation Mechanism.
- Mechanistic Design of Graphdiyne-Based Multimodal Sensing Integrating Machine Learning and Photothermal Dynamics for Precision Recognition and On-Demand Inactivation.
- Sialylated CD43 forms a glyco-immune barrier that restrains antileukemic immunity.
- Allosteric activation mechanism of the type VII CRISPR-Cas system.
- Efficient multi-kilobase knock-ins in mice and cell lines using CRISPR/Cas9 and rAAV donors with unbiased whole-genome characterization by LOCK-seq.
- The yeasts associated with the fungus-growing termite, Macrotermes michaelseni, of Botswana: biodiversity and potential functional roles.
- Identification and characterization of two novel Acinetobacter species capable of degrading polyester.
- Dual-Mode CRISPR/Cas13a Assay for the Detection of Human Metapneumovirus in Clinical Respiratory Samples.
- De novo hybrid genome assembly and analysis of Salmonella enterica serovar Kentucky of Indian origins.
- Cell-cycle regulation of sarcomere integrity-Role for Actn2 phosphorylation.
- Development of liquid chip for functional genes in foxtail millet (Setaria italica) and association analysis of related traits.
- Genome editing and regeneration pipeline for engineering disease resistance in tomato using CRISPR/Cas9.
- MYH9: Structure, functions, and therapeutic implications in cancer and genetic disorders.
- Cholesterol analogs modulate lipid nanoparticle performance for mRNA delivery after lyophilization and enable ocular disease therapy.
AI & Machine Learning
- Use of artificial intelligence and radiomics for diagnosis and prediction of osteoporotic fractures: a systematic review.
- Comparative study of different artificial intelligence (AI)-assisted compressed sensing factors in inner ear heavily T2-weighted imaging.
- Direct Annotation of Unstructured Clinical Progress Notes Describes Postpartum Healthcare Needs and Encounter Characteristics of Women Whose Newborns Are Immediately Hospitalized in Intensive Care.
- Evaluating Public Sentiment on Attention-Deficit/Hyperactivity Disorder and Autism Spectrum Disorder Compared With Other Mental Health Disorders From Posts on X (Formerly Known as Twitter): Longitudinal Analysis.
- CONFIDENT-HFpEF: A Machine Learning-Based Risk Stratification for Mortality and Hospitalization Using Multimodal Real-World Data.
- Authors' Reply to 'Methodological Considerations for Surveys of Dental Students' Knowledge and Attitudes Towards Artificial Intelligence in Oral Cancer Diagnosis'.
- Innovations in Deaf Health Care Communication: Systematic Review of Sign Language Recognition Systems.
- Empathic AI for Patient-Centered Cancer Care: A Scoping Review of Patient Navigation, Support, and Clinical Practice.
- Hyperspectral imaging-driven detection of neutraliser adulteration in milk using spatial-spectral features.
- Mechanistic Design of Graphdiyne-Based Multimodal Sensing Integrating Machine Learning and Photothermal Dynamics for Precision Recognition and On-Demand Inactivation.
- Impact of Chemical Quality on High-Throughput in Vitro Assays: A Tox21 Study.
- Invasive haemodynamic validation of an artificial intelligence echocardiographic tool for detecting heart failure with preserved ejection fraction.
- How artificial intelligence is reengineering protein engineering.
- Personalized Antibiograms Using Multi-Task Machine Learning: Toward Mechanistic Understanding and Robust Calibration.
- Beat-to-beat variability of ventricular repolarization reveals sex-specific instability and proarrhythmic risk.
Neuroscience
- Are We Getting What We Ask For: Few Patients Meet Mean Arterial Pressure (MAP) Goals After Intraoperative Neuromonitoring (IONM) Changes During Pediatric Spine Surgery.
- Learning and Representation of Categories in the Rodent Brain.
- Methylglyoxal Accumulation is Associated with Brain Inflammation after Myocardial Infarction with Sex and Regional Differences.
- Luminal surface proteome of the brain vasculature uncovers blood-brain barrier regulators.
- Distinct Patterns of Directed Brain Connectivity in Focused Attention, Open Monitoring, and Loving Kindness Meditation: An Electroencephalographic Granger Causality Study with Long-term Meditators.
- Association of Body Mass Index with Disorders of Gut-Brain Interaction: A Large Global Population-Based Analysis.
- Mitochondrial Transfer: From Bench to Bedside.
- Reduced dependence on sensorimotor processing in the brain is associated with higher math skills in adults.
- Comparison of the effects of intensities and sessions of extracorporeal shock wave therapy on nerve regeneration in rats with experimentally induced sciatic nerve injury.
- Day-night variation and age-related differences in gadolinium-based contrast media enhancement in the brain: A T1 mapping study.
- Spacing-Compensated Measurement of the Acoustoelectric Interaction Constant for Quantitative Current-Density Imaging in Saline and Brain Tissue.
- Muscle Network of Parkinson's Gait: A 12-Month Longitudinal Analysis Before and After Deep Brain Stimulation Surgery.
- Classification of functional brain patterns elicited by deep brain stimulation of the subthalamic nucleus in Parkinson's disease.
- BEST1-mediated tonic excitation facilitates anxiety-like behaviors in a mouse model of chronic neuropathic pain.
- Dysregulation of astrocytic DNAJC6 contributes to sporadic Parkinson's disease pathogenesis.
Climate Science
- Arctic and Boreal Wildfires Impact Climate by Releasing Ancient Carbon and Light-Absorbing Particles.
- Spatiotemporal modeling of urban green space connectivity and landscape structure for climate adaptation in Tehran, Iran.
- Temporal changes in intensity of bird parasite infections are dependent on latitude in the Western Palearctic.
- Inhibition of Chikungunya virus nsP2 protease in vitro by scorpion venom peptide pantinin-1.
- Reframing Global Neurosurgery: The Response to Hurricane Melissa in Jamaica as a Model for Action.
- Roles of riverine wetlands in diffusive greenhouse gas emissions: Comparing before and after wetland destruction.
- Effects of fire timing and snow cover on tallgrass prairie plant re-emergence phenology, growth rate, and flowering.
- Aqueous Upcycling of Polyethylene Furanoate From Mixed Plastic Feeds Into Metal-Organic Frameworks.
- Seasonal stoichiometry of terrestrial consumer-resource interactions.
- Drivers of Thermal Habitat Use in Turtles Studied Under Semi-Natural Conditions.
- Eco-friendly carbon dot-based nanocomposites in smart construction materials for green-house gases reduction.
- Measuring the carbon cost of hand surgery: A single-centre observational study.
- Intestinal mucosal barrier injury: insights from interdisciplinary perspectives and therapeutic approaches.
- Interventions to promote mental and physical health in changing working environments due to climate change, sustainable work practices, and work in green jobs: The EU INTERCAMBIO project.
- Recent advances in MOF-based single-atom photocatalysts for CO(2) to solar fuel conversion under sunlight irradiation.
Medicine
- Microtubule-stabilizing drugs suppress convulsions in a C. elegans model of CAMSAP disorders.
- Identification of vital sign trajectory phenotypes and treatment response heterogeneity in critically ill patients with ischemic stroke: A multicenter study with external validation.
- Twelve-week intermittent hypoxia intervention in multiple sclerosis - A safety and feasibility trial.
- PICCTURE: Survey of French ophthalmologists' practices for the treatment of neovascular age-related macular degeneration patients currently treated with anti-VEGF.
- African swine fever virus MGF_110-8L promotes host cell autophagy and suppresses interferon signaling by activating the unfolded protein response.
- Moving toward a more rigorous science of recruitment in clinical research. Commentary on "Evaluating evidence-based recruitment strategies for Alzheimer's disease and related dementias clinical trial research: a literature review".
- An antiproliferative bioactive flavanol from Vachellia nilotica nilotica (L.) P.J.H. Hurter & Mabb. against Osteosarcoma cell line: An in-vitro and in-silico study.
- Clinical strategies for lymphoma management: Recommendations from the Bridging the Gaps in Leukemia, Lymphoma, and Multiple Myeloma Consensus Conference 2025.
- Nitrous Oxide for Pain Management in Office Hysteroscopy: A Randomized Placebo-Controlled Trial.
- CONFIDENT-HFpEF: A Machine Learning-Based Risk Stratification for Mortality and Hospitalization Using Multimodal Real-World Data.
- Sonodynamic Therapy Attenuates TLR4/NF-κB Signaling in Epicardial Adipose Tissue of Atrial Fibrillation: Insights from Animal Models, scRNA-seq, and Mendelian Randomization.
- The right to psychiatric assistance in places of deprivation of liberty: european standards.
- Current landscape of photosensitizers in photodynamic therapy: challenges and future perspectives - a literature review.
- The role of the MIND diet in prevention and treatment of Alzheimer's disease: A literature review.
- Diet therapy as a component of ancient medicine.
Genomics
- Discovery of Aromatic Meroterpenoids with Potent Anti-biofilm Activity and Genome-Guided Identification of Two Prenyltransferases.
- scAClc: A Multi-Objective Adaptive Clustering Framework for Single-Cell Transcriptomics via Contrastive and Resolution-Aware Representation Learning.
- Genomic characterization of aggressiveness in pituitary neuroendocrine tumors (PitNETs).
- SARS-CoV-2 targets mitochondria, exacerbating COVID-19 pneumonia.
- Emergence of Extensively Drug-Resistant Shigellosis - United States, 2011-2023.
- Resolving competing evolutionary histories in joint ancestral state reconstruction.
- SpaJoint: a transfer learning method for spatial transcriptomics deconvolution.
- Loss of Tumor-Infiltrating Lymphocytes and Poor Response to Immunotherapy in IDH GOF Mutant Melanoma.
- Polygenic and monogenic adaptation drive evolutionary rescue at different magnitudes of environmental change.
- Multi-omics Approaches for Biomarker Discovery of Uterine Fibroids: A Systematic Review.
- Elucidating the role of YlMDH2 in temperature-dependent mannitol biosynthesis in Yarrowia lipolytica via integrative multi-omics and structural analysis.
- Characterization of a novel phage-plasmid vB_EcoM_ED targeting multidrug-resistant Escherichia coli isolates.
- Identification and characterization of a novel Robigovirus infecting wild cherry trees in Tunisia.
- Public and patient involvement: exploring public partnership in pathogen whole-genome sequencing research and its data visualisation.
- Genomic Insights into the Biology of T-lineage Acute Lymphoblastic Leukemia.
Immunology
- Identification of Salmonella enterica serovar Enteritidis mutants overproducing OMVs as vaccine candidates.
- Coxiella burnetii shedding in dairy cattle and its correlation with humoral and cell-mediated immune responses.
- Social Determinants of Childhood Vaccination Coverage in the United States Using National Immunization Survey Data From 2010 to 2023: Cross-Sectional Study.
- The use of denosumab in rare bone diseases in adults: a systematic review from the ECTS Rare Bone Disease Action Group.
- Plant-based enteral nutrition outperforms ultra-processed formulas in mitigating consequences of antibiotic-induced dysbiosis.
- Transdermal Delivery of an mRNA-Liposome Vaccine via Dissolving Microneedle to Preserve Vaccine Activity and Enhance Immune Activation.
- Herpes zoster-like reaction triggered by the recombinant vaccine against herpes zoster (Shingrix).
- Platelet transfusion refractoriness in Glanzmann thrombasthenia: a case report with literature review.
- Mucosal Gingipain Vaccine Based on Framework Nucleic Acid Engineering for the Treatment of Periodontitis.
- Clotting the Gap Between Mitochondria-Mediated Immunity and Mitochondrial Transfer.
- Accumulation of mutations in nsp4, E, and the S2 subunit underlies mammalian cell tropism expansion and virulence attenuation of avian coronavirus.
- Development of a new sandwich ELISA for the detection of bovine A1 beta-casein.
- Prenatal exposure to per- and polyfluoroalkyl substances (PFAS) and incidence of asthma and wheeze in childhood: A register-based cohort study in Ronneby, Sweden.
- Cell-free RNA reveals host and microbial correlates of broadly neutralizing antibody development against HIV.
- Fibroblast crosstalk promotes mucin synthesis by COPD-derived airway epithelial cells.
Microbiology
- Dry transfer and adhesion of Cronobacter sakazakii on food-contact surfaces.
- Clinical evaluation of probe capture based targeted next generation sequencing for pulmonary infection in immunocompromised patients: a cross-sectional diagnostic accuracy study.
- Minimal Disruption of the Rectal Microbiome in Acute and Early Untreated HIV Infection.
- Clinical Features of Newly Diagnosed Cytomegalovirus Retinitis in South India.
- Expired Dialysate, Unexpected Pathogen: First Reported Case of Streptomyces olivaceus Peritonitis in a Peritoneal Dialysis Patient.
- Plant-based enteral nutrition outperforms ultra-processed formulas in mitigating consequences of antibiotic-induced dysbiosis.
- Multi-Enzyme Mimetic Molybdenum Nitride Nanozymes Reshape Subgingival Microenvironment for Synergistic Periodontitis Therapy via ROS Regulation and Microbiome Remodeling.
- Unlocking the Phyllosphere's Role: Selenium Nanoparticles Reprogram Sulfur Metabolism and Enrich Sphingomonas to Reduce Cadmium in Wheat.
- Selective trapping of bacteria in porous media by cell length.
- Competence-mediated DNA uptake diversifies Vibrio cholerae sedentary chromosomal integrons.
- Wildlife trade drives animal-to-human pathogen transmission over 40 years.
- Pesticides may wreak havoc on the gut microbiome.
- A microbiome quantitative trait locus in SLC39A8 modulates disease severity in synucleinopathy-induced models of Parkinson's disease.
- Risk Factors, Treatment Outcomes, and Isolate-dependent Differences of Candida Keratitis.
- Molecular identification and microbiome profiling of household casebearer, Phereoeca sp. (Lepidoptera: Tineidae) from Malaysia: Potential implications for human skin irritation.
Evolutionary Biology
- From Aphorism to Algorithm: The Evolution of Medical Knowledge.
- Finite-Temperature Evolution of Frenkel Defects in Hybrid Perovskites: Healing and Lead-Methylammonium Antisite Pairs.
- Photothermal-Enhanced Vapor-Phase Photocatalytic Hydrogen Evolution.
- Electrochemically Induced Oxide-to-Hydroxide Transformation Enables Fast Proton Transport for Enhanced Hydrogen Evolution.
- Purple potential in petunias: flavonoid pathway related regulator evolution.
- Polygenic and monogenic adaptation drive evolutionary rescue at different magnitudes of environmental change.
- The evolution of retrograde intrarenal surgery: a comprehensive meta-analysis of suction-assisted versus conventional techniques against mini-PCNL for 2-3 cm renal stones.
- High-resolution observation of aerosol particle size distribution and chemical evolution during two consecutive dust events in Xi'an.
- Goals of Care: a framework in evolution.
- Genomic and evolutionary characterization of Chandipura virus: a cause of the 2024 outbreak in Gujarat, India.
- Lewis acidic boron-oxygen interactions activate cobalt oxysulfide for oxygen evolution reaction.
- A Decoupled-Motif Strategy Directs Supramolecular Charge-Transfer Architectures Toward Efficient Photocatalytic H(2) Evolution.
- Spectroelectrochemical Studies of Oxygen Evolution Reaction Kinetics for Surface-Incorporated Iron in Nickel Oxyhydroxide Electrocatalysts.
- Systems biology in the era of AI: "winter" or "evolution"?
- Zobrist hash-based duplicate detection in symbolic regression.
Molecular Ecology
- Are current tools enough to tackle the ocean biodiversity crisis?
- The yeasts associated with the fungus-growing termite, Macrotermes michaelseni, of Botswana: biodiversity and potential functional roles.
- Windows of Openness to Interaction: Towards Constructive Transdisciplinary Environmental Research and Management.
- Understanding the Distribution of Muscidae Flies and Their Role as Vectors of Bacterial Pathogens in South Africa: A Review Using BOLD Barcoding Data.
- Swabbing as a Non-Lethal DNA Collection Method for Earthworm Barcoding: Performance and Citizen Science Perspectives.
- Evidence of Genetic Continuity in the Shortfin Mako Shark (Isurus oxyrinchus) Between the Eastern Atlantic and Mediterranean Sea.
- A Beginner's How-To Guide to Urban Population Genetics and Genomics.
- Fern Gametophytes Exhibit Distinct Patterns of Niche Expansion and Convergence in Ecophysiological Functioning.
- Can a Top Predator Persist After One of the World's Largest Mining Dam Failures? Occupancy Dynamics of the Neotropical Otter in Brazil's Paraopeba River.
- Unveiling the Patterns of Wild Bee-Plant Interactions on a Large and Mostly Unexplored Mediterranean Island (Sardinia, Italy).
- e3SIM: Epidemiological-ecological-evolutionary simulation framework for genomic epidemiology.
- Untargeted metabolomic data of some Indonesian seaweed species (Halymenia durvillei, Gracilaria gigas, Caulerpa racemosa, and Palmaria palmata).
- Genetic diversity and population structure of the native grass carp (Ctenopharyngodon idella) from the Xiangjiang River revealed by microsatellite markers.
- Genomic analysis of population structure and target-site mutations of Tetranychus trunctus in China.
- What drives population fluctuations of European ground squirrels in Hungary?
arXiv Physics
- PDF Temporal Structure Mediates the Robustness and Collapse of Plant-Pollinator Networks
- PDF The Non-Gaussian Weak-Lensing Likelihood: A Multivariate Copula Construction and Impact on Cosmological Constraints
- PDF Explicit Electric Potential-Embedded Machine Learning Framework: A Unified Description from Atomic to Electronic Scales
- PDF Behavioral-Level Simulation of Digital Readout for COFFEE at LHCb Upstream Pixel Tracker
- PDF Slip optimization on arbitrary 3D microswimmers: a reduced-dimension and boundary-integral framework
- PDF Phase-Selective Excitation of Betatron Oscillations by Nonadiabatic Magnetic-Field Switching
- PDF Multispectral representation of Distributed Acoustic Sensing data: a framework for physically interpretable feature extraction and visualization
- PDF Two-dimensional shelving spectroscopy of ultraviolet ground state transitions in dysprosium
- PDF TurPy: a physics-based and differentiable optical turbulence simulator for algorithmic development and system optimization
- PDF Emergence of cooperation in nonlinear higher-order public goods games
- PDF Viscous Bending Mitigates the Spontaneous Meandering of Rivulets in Hele-Shaw Cells
- PDF Defect-free arrays at the thousand-atom scale in a 4-K cryogenic environment
- PDF Dual-Tuned 31P-1H Dual-Row Loop/Dipole 32-element Transceiver Array for Human Brain Spectroscopy at 9.4T
- PDF Symmetry-Engineered Magnetic Dipole Emission in Plasmonic Core-Satellite Resonators
- PDF What's in the latent space? Exploring coupled tropical Pacific variability within a Multi-branch $β$-Variational Autoencoder
arXiv Mathematics
- PDF Spectral Difference Method with a Posteriori Limiting: III- Navier-Stokes Equations with Arbitrary High-Order Accuracy
- PDF $p$-adic Theory for Partial Toric Exponential Sums
- PDF Conformal Prediction with Time-Series Data via Sequential Conformalized Density Regions
- PDF The quantitative Beurling-Helson Theorem
- PDF Gaussian Approximation for Asynchronous Q-learning
- PDF Negative curvature obstructs the existence of good barriers for interior-point methods
- PDF Slip optimization on arbitrary 3D microswimmers: a reduced-dimension and boundary-integral framework
- PDF Improved Implementation of Approximate Full Mass Matrix Inverse Methods into Material Point Method Simulations
- PDF On a conjecture of Deines
- PDF On the cohomology of negative Tate twists via cyclotomic descent
- PDF Some probabilistic properties and time-changed versions of a renewal process based on Mittag-Leffler waiting times
- PDF Reconstruction of F-cohomological field theories on moduli of compact type
- PDF Stable degeneration and birational geometry
- PDF A note on b-divisors and filtrations on a local ring
- PDF Compactness of Solutions to Sub-Elliptic Equations with Potential on the Heisenberg Group
arXiv Computer Science
- PDF Fast Spatial Memory with Elastic Test-Time Training
- PDF Toward a Tractability Frontier for Exact Relevance Certification
- PDF MoRight: Motion Control Done Right
- PDF Measurement of Generative AI Workload Power Profiles for Whole-Facility Data Center Infrastructure Planning
- PDF NIRVANA: A Comprehensive Dataset for Reproducing How Students Use Generative AI for Essay Writing
- PDF Personalized RewardBench: Evaluating Reward Models with Human Aligned Personalization
- PDF ReCodeAgent: A Multi-Agent Workflow for Language-agnostic Translation and Validation of Large-scale Repositories
- PDF TC-AE: Unlocking Token Capacity for Deep Compression Autoencoders
- PDF Appear2Meaning: A Cross-Cultural Benchmark for Structured Cultural Metadata Inference from Images
- PDF From Blobs to Spokes: High-Fidelity Surface Reconstruction via Oriented Gaussians
- PDF TAMEn: Tactile-Aware Manipulation Engine for Closed-Loop Data Collection in Contact-Rich Tasks
- PDF RoSHI: A Versatile Robot-oriented Suit for Human Data In-the-Wild
- PDF Distilling Photon-Counting CT into Routine Chest CT through Clinically Validated Degradation Modeling
- PDF How to sketch a learning algorithm
- PDF Gaussian Approximation for Asynchronous Q-learning
arXiv Quantitative Biology
- PDF Temporal Structure Mediates the Robustness and Collapse of Plant-Pollinator Networks
- PDF Generation time in a discrete epidemic model with asymptomatic carriers: beyond geometric waiting times
- PDF Emergence of cooperation in nonlinear higher-order public goods games
- PDF Probing 3D Chromatin Structure Awareness in Evo2 DNA Language Model
- PDF A modular approach to achieve multistationarity using AND-gates
- PDF Exploring the proprioceptive potential of joint receptors using a biomimetic robotic joint
- PDF WebCVTree4: A Newly Designed Phylogenetic and Taxonomic Study Platform for Prokaryotes Using Composition Vectors and Whole Genomes
- PDF ECLIPSE: A Composable Pipeline for Predicting ecDNA Formation, Evolution, and Therapeutic Vulnerabilities in Cancer
- PDF When Does Context Help? A Systematic Study of Target-Conditional Molecular Property Prediction
- PDF The Mechanistic Invariance Test: Genomic Language Models Fail to Learn Positional Regulatory Logic
- PDF Bridging Theory and Practice in Crafting Robust Spiking Reservoirs
- PDF Modeling Patient Care Trajectories with Transformer Hawkes Processes
- PDF PhageBench: Can LLMs Understand Raw Bacteriophage Genomes?
- PDF GenomeQA: Benchmarking General Large Language Models for Genome Sequence Understanding
- PDF Mathematical Models of Evolution and Replicator Systems Dynamics. Chapter 1: Introduction to Replicator Systems
arXiv Quantitative Finance
- PDF SoK of RWA Tokenization: A Systematization of Concepts, Architectures, and Legal Interoperability
- PDF Sequential Audit Sampling with Statistical Guarantees
- PDF Beyond Black-Scholes: A Computational Framework for Option Pricing Using Heston, GARCH, and Jump Diffusion Models
- PDF Tail copula representation of path-based maximal tail dependence
- PDF Priced risk in corporate bonds
- PDF Generative Path-Law Jump-Diffusion: Sequential MMD-Gradient Flows and Generalisation Bounds in Marcus-Signature RKHS
- PDF Anticipatory Reinforcement Learning: From Generative Path-Laws to Distributional Value Functions
- PDF $α$-robust utility maximization with intractable claims: A quantile optimization approach
- PDF Dividend ratcheting and capital injection under the Cramér-Lundberg model: Strong solution and optimal strategy
- PDF The Co-Pricing Factor Zoo
- PDF Financial Relativity: An Information-Geometric Interpretation of Asset Pricing
- PDF Forecasting Tangency Portfolios and Investing in the Minimum Euclidean Distance Portfolio to Maximize Out-of-Sample Sharpe Ratios
- PDF Asset allocation using a Markov process of clustered efficient frontier coefficients states
- PDF PolySwarm: A Multi-Agent Large Language Model Framework for Prediction Market Trading and Latency Arbitrage
- PDF SoK: Blockchain Agent-to-Agent Payments