Protein Data Bank
- 3D 10NU: Structure of kRas G12C bound to Inhibitor 13ab
- 3D 10NV: Structure of kRas G12C Bound to Inhibitor 13ba
- 3D 10OO: FGFR2 mutant D650V with compound 4 (AZD3463)
- 3D 10OQ: FGFR2 mutant D650V with compound 6
- 3D 10OU: FGFR2 mutant D650V with compound 12
- 3D 11SZ: Antibody (1B2) Bound Rifamycin Synthetase Module 2
- 3D 12FK: Ancestral Reconstruction of a Homing Endonuclease
- 3D 12GB: High Resolution Structure of Monomorphic AB1-40 Fibrils
- 3D 12HH: Ancestral Reconstruction of a Homing Endonuclease
- 3D 12IS: Crystal structure of a SnoaL-like domain-containing protein from Mycobacterium ulcerans (Zinc Bound)
PDB Nitrogen Cycle
- 3D 22EY: Crystal structure of thioredoxin gluthathione reductase from Schistosoma japonicum SjTGR-WT
- 3D 22FC: Crystal structure of thioredoxin gluthathione reductase from Schistosoma japonicum with the U597C mutation SjTGR-U597C
- 3D 22FD: Crystal structure of thioredoxin gluthathione reductase from Schistosoma japonicum with the U597C mutation in complex with NADPH
- 3D 22FE: Crystal structure of thioredoxin gluthathione reductase from Schistosoma japonicum with the U597C mutation in complex with GSH
- 3D 22FF: Crystal structure of thioredoxin gluthathione reductase from Schistosoma japonicum with the U597C mutation in complex with auranofin
- 3D 25BV: Crystal structure of P450cam mutant-F87R
- 3D 7HK8: Crystal Structure of N-methylhydantoinase in complex with 1-methylimidazolidine-2,4-dione, C2221 form
- 3D 7HK9: Crystal Structure of N-methylhydantoinase in complex with ZN2+ and ADPNP
- 3D 9GZD: Androgen Receptor ligand-binding domain in complex with 11-ketodihydrotestosterone
- 3D 9I88: Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
PDB Photosynthesis
- 3D 22EY: Crystal structure of thioredoxin gluthathione reductase from Schistosoma japonicum SjTGR-WT
- 3D 22FC: Crystal structure of thioredoxin gluthathione reductase from Schistosoma japonicum with the U597C mutation SjTGR-U597C
- 3D 22FD: Crystal structure of thioredoxin gluthathione reductase from Schistosoma japonicum with the U597C mutation in complex with NADPH
- 3D 22FE: Crystal structure of thioredoxin gluthathione reductase from Schistosoma japonicum with the U597C mutation in complex with GSH
- 3D 22FF: Crystal structure of thioredoxin gluthathione reductase from Schistosoma japonicum with the U597C mutation in complex with auranofin
- 3D 9I88: Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- 3D 9I89: Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin
- 3D 9OZ9: Flavobacterium johnsoniae 70S initiation complex with Shine-Dalgarno-less mRNA.
- 3D 9OZN: Flavobacterium johnsoniae 70S initiation complex with rpsU mRNA containing Shine-Dalgarno sequence. State 1.
- 3D 9OZZ: Flavobacterium johnsoniae 70S initiation complex with rpsU mRNA containing Shine-Dalgarno sequence. State 2.
PDB PFAS Degradation
- 3D 9QR7: Structural characterization of a N-acetylmuramic acid-binding site in human RNase2
- 3D 9UBE: Metallo-Beta-Lactamase VIM-2 in Complex with MBL/SBL Inhibitor FB1-9
- 3D 9UE4: Serine Beta-Lactamase OXA-48 in Complex with MBL/SBL Inhibitor FB3-2
- 3D 9UEM: Metallo-Beta-Lactamase VIM-2 in Complex with MBL/SBL Inhibitor FB1-12
- 3D 9YWN: Protein Structure of the First Glycoside Hydrolase Family 30, Subfamily 12 Endoxylanase
- 3D 9MQM: Cryo-EM structure of a membrane transport protein
- 3D 9NHZ: Cryo-EM structure of a membrane transport protein
- 3D 9U9L: Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - Trp185Tyr/His280Ala with 2-fluoro-3-phenylpropanoic acid
- 3D 9ZWK: High-resolution cryo-EM structure of KdpFABC in the E1 state in lipid nanodisc
- 3D 9ZWL: High-resolution cryo-EM structure of KdpFABC in the E1-ATP state in lipid nanodisc
Project Gutenberg
- Little Women EPUB PDF
- The Prince EPUB PDF
- Aesop's Fables EPUB PDF
- The War of the Worlds EPUB PDF
- The Yellow Wallpaper EPUB PDF
- The Communist Manifesto EPUB PDF
- Moby Dick EPUB PDF
- Frankenstein EPUB PDF
- Macbeth EPUB PDF
- The Souls of Black Folk EPUB PDF
- Metamorphosis EPUB PDF
- Anna Karenina EPUB PDF
- Bleak House EPUB PDF
- The Bible, Douay-Rheims Version EPUB PDF
- Romeo and Juliet EPUB PDF
GitHub bioRxiv
-
Huising-Lab/epiRomics
5
R
An R package designed to integrate and visualize various levels of epigenomic in...
-
edgardomortiz/Captus
39
Python
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
-
vikshiv/mumemto
130
C++
Mumemto: multi-MUM and MEM finding across pangenomes
-
PashavanBijlert/MuSkeMo
56
TeX
Build and visualize musculoskeletal models in Blender
-
klangenf/QuantMeta
5
R
QuantMeta determines the absolute abundance of targets in metagenomes spiked wit...
-
Huang-lab/fastVEP
11
Rust
fastVEP: High-performance Variant Effect Predictor in Rust
-
mims-harvard/ToolUniverse
1267
Python
Democratizing AI scientists with ToolUniverse
-
CultureBotAI/CultureMech
8
HTML
Microbial Culture Media Knowledge Graph - Comprehensive collection of 10,000+ cu...
-
flyark/LIVIA
5
HTML
LIVIA (Local Interaction VIsualization and Analysis) — Analyze and visualize pro...
-
ToxMCP/toxmcp
15
Unknown
Umbrella repo for the ToxMCP Suite (docs, links, quickstart).
Synthetic Biology
- Genome-wide analysis of fifteen flavonoid biosynthesis gene families in moso bamboo (Phyllostachys edulis) and functional characterization of PeFNSI1 in modulating salicylic acid metabolic flux.
- A Study on the Mechanism of Action of Hyperoside in Treating Type 2 Diabetes: Integrating Metabolomics, Network Pharmacology, Molecular Docking, and Experimental Validation.
- Antimicrobial Peptide Spampcin(56-86) Controls Fusarium graminearum and Mycotoxin via Membrane Disruption and Oxidative Burst with TRI Repression: A Strategy for Wheat Protection.
- Recent Advances in the Evolutionary Classification and Structural Insights of Hyaluronan Synthase.
- Synthetic control of implanted engineered liver tissue growth.
- Japanese encephalitis virus orchestrates GLUT4-mediated glucose metabolism to potentiate viral replication via insulin receptor signaling.
- Title: DAP-Seq Reveals Cluster-Situated Regulator Control of Numerous Streptomyces Natural Product Biosynthetic Genes.
- Multidomain DNA-Protein Mining Reveals Polymorphic Variations in RhlB Enhancing Monorhamnolipid Biosynthesis.
- Lactate-driven pyrimidine synthesis promotes ferroptosis resistance in hepatocellular carcinoma.
- Metabolomics profiling of acute myelogenous leukemia patients to identify systemic differences associated with in vitro sensitivity to SYK inhibitors.
- RNA-templated diversity generation via reverse transcription and homologous recombination: an evolutionary hypothesis.
- Genomic characterization, annotation, and comparative analysis of Ludisia discolor reveal its evolutionary and functional traits.
- Short-term modulation of human milk oligosaccharides in plasma and milk by glucose and insulin: insights into postpartum metabolic regulation.
- A metabolic complex of acyltransferase enzymes involved in tomato acylsugar biosynthesis.
- The Role of Metal Complexation in the Unfolding Energetics of a Nudix Hydrolase.
Biotechnology
- CRISPR/Cas9-mediated generation of a REPS2 knockout human embryonic stem cell line.
- Double-CRISPR Knockout Simulation (DKOsim): A Monte-Carlo randomization system to model cell growth behavior and infer the optimal library design for growth-based double knockout screens.
- FSTL3-Driven Cuproptosis Resistance and EPCs Promote OSCC Metastasis.
- Therapeutic Strategies Targeting the Molecular Pathogenesis of Myotonic Dystrophy Type 1: Current Status and Future Directions.
- The molecular network in bacteria responsible for the mitigation of salinity stress.
- Trajectory inference for a branching SDE model of cell differentiation via lineage tracing.
- Specificity of polyclonal oligopeptide antisera targeting glycoprotein hormones from the Japanese Eel (Anguilla japonica).
- Engineering immune-evasive islet replacement: cell-intrinsic and peri-graft strategies.
- CsPNRC1 regulated the resistance of Fusarium wilt by interacting with Csfla15 to influence the cell wall structure of cucumber (Cucumis sativus L.).
- Fragmentation and aggregation of cyanobacterial colonies.
- Measuring the Impact of Medical Science Liaisons: A Global Cross-Sectional Survey of Evaluation Practices and Perceptions.
- A CRISPR-Cas13d cancer therapeutic enables selective elimination of uveal melanoma.
- The impact of the 2019 revision of China's drug administration law on the innovative output of pharmaceutical and biotechnology enterprises-a quasi-natural experimental study using sharp regression discontinuity design.
- Protein design, generative AI and biological security.
- Phage amplification-coupled CRISPR/Cas12a system for selective detection of viable E. coli in fresh produce.
AI & Machine Learning
- Predicting disintegration time in fast-disintegrating tablets using machine learning: a data-driven framework based on functional excipient representation.
- Temporal Knowledge Discovery in Drug-Resistant Tuberculosis: A Decade-Long Machine Learning Analysis From Egyptian Clinical Data.
- Transformer-based multi-agent traffic simulation for autonomous vehicle testing in shared urban road segments.
- In silico virtual knockout identifies PXDNL as a fibroblast-specific driver of sarcopenia and GABA as a potential modulator.
- The relationship between mental health disorders and LUTS.
- Integrating Sperm Microscopy, Environmental Exposures, and Lifestyle Factors for Male Fertility Analysis: Protocol for the Nippon Semen and Environmental Exposure Database (N-SEED) Cross-Sectional Study.
- Association between diagnostic history and cancer incidence within 5 years: a real-world observational analysis.
- Identifying Weekly Physical and Physiological Profiles in Professional Basketball Using Heart Rate Variability and Training Load Clustering.
- Super-Resolution Microscopy for Precision Microsphere Defect Inspection Using Sparrow-Optimized Autocorrelation Deconvolution.
- Leveraging long-read assemblies and machine learning to enhance short-read transposable element detection and genotyping.
- scGPD: single-cell informed gene panel design for targeted spatial transcriptomics.
- CRESCENT: a deep learning framework with multi-scale attention for detecting recurrent copy number alterations.
- TPP-Fabricated All-Fiber Nanoforce Sensor with Deep Learning Analysis Enables Ultrasensitive Cancer Cell Mechanophenotyping.
- Fingerprinting organic molecules for the inverse design of two-dimensional hybrid perovskites with target energetics.
- A TIEGCM-based inversion model for ionosphere-thermosphere parameters driven by three-dimensional electron density.
Neuroscience
- Seasonal variation in childhood acute lymphoblastic leukemia, but not in acute myeloid leukemia, or brain tumors - A Swedish population-based study.
- The relationship between mental health disorders and LUTS.
- Letter to the Editor. Surgical site infection after cranioplasty for brain tumor.
- Comparative performance of CT scales for outcome prediction at discharge in pediatric traumatic brain injury: a retrospective cohort study.
- Understanding femoral nerve injuries during extreme lateral lumbar interbody fusion using transabdominal muscle action potential and an event-based protocol.
- Microsurgical management of tentorial dural arteriovenous fistula: an analysis from the Consortium for Dural Arteriovenous Fistula Outcomes Research (CONDOR).
- Lithium in Mood and Bipolar Disorders: Historical Development, Mechanisms, and Clinical Implications.
- Preliminary Usability Assessment of a Rule-Based Digital Self-Monitoring Platform for Patients With Brain Tumors Toward Digital Early Warning Systems: Pilot Feasibility Study.
- Intranasal Versus Intramuscular Midazolam in Pediatric Seizure Control: A Systematic Review and Meta-Analysis.
- Development and validation of an early risk-stratification model for hemophagocytic lymphohistiocytosis in severe fever with thrombocytopenia syndrome.
- BC-GTM: A Bidirectional Causal Graph Transformer Mapping for Modeling Brain Structural and Functional Connectivity.
- Towards adaptive optimal personalization control of robotic hip exoskeleton assistance for individuals with paretic stroke.
- Binaural Beat Stimulation for Cognitive and Psychological Enhancement in Alzheimer's Disease: A Pilot Study.
- Gastrodin alleviates neuronal damage in epileptic cell models by targeting P2RY12 to inhibit microglial hyperactivation.
- A novel SLC20A2 nonsense variant and mechanistic studies of primary brain calcification.
Climate Science
- Integrated On-Site Electrocatalytic H(2)O(2) Synthesis and Membrane Catalysis for Sustainable High-Salinity Wastewater Treatment.
- Historical and contemporary genomes of an endangered rodent reveal shifts in environmentally associated genes.
- Hurricanes, Neighborhood Disadvantage, and Cardiopulmonary Health in US Veterans.
- Correction to: Climate change and infertility: global evidence on temperature-related reproductive risks and demographic vulnerability.
- Assessing spring frost-induced production losses across China's apple planting regions.
- The climate change risk awareness scale.
- Improving wheat tolerance to post-flowering heat using matched development stages and field-based reaction norms.
- Thermal and structural characterisation of resistant starch from Andean roots cultivated in Colombia.
- Microbiome education at under-resourced institutions: current status, barriers, and approaches to successful implementation.
- Examining pathogenic Vibrio abundance and environmental controls across macroalgae, sediment, and oysters.
- Mapping two decades of research on climate change and women's reproductive health: A bibliometric analysis (2000-2024).
- Emergent symbiont strains provide thermally robust protection against co-evolved and novel parasitoids of introduced pea aphids.
- Dengue in a warming world: changing epidemiology, vaccines, and therapeutic developments.
- Asymmetric Shifts in Precipitation Alter Nitrogen Use Strategies in Global Croplands.
- Seasonal Flooding Disrupts Expected Depth-Dependent Patterns of Mineral Associated Carbon, Nitrogen, and Phosphorus Across Land Uses.
Medicine
- Disease characteristics and treatment outcomes in patients with resected early-stage ALK-positive non-small cell lung cancer from the randomized ALINA trial.
- Dissecting the prognostic role of metabolic markers in lung neuroendocrine Tumors: The MONET study.
- Brief protocol to improve ataxia symptoms via cerebello-spinal direct current stimulation during gait training.
- In silico virtual knockout identifies PXDNL as a fibroblast-specific driver of sarcopenia and GABA as a potential modulator.
- Novel therapeutic strategies leveraging T(H)9 cell anticancer functions.
- Potential compounds and mechanism of Scutellariae Radix for improving post-stroke cognitive impairment.
- Lithium in Mood and Bipolar Disorders: Historical Development, Mechanisms, and Clinical Implications.
- Dysregulation of myddosome complex genes its related to alendronate treatment failure in osteoporosis postmenopausal patients.
- What Is the Association Between Adding Genicular Nerve Block to Adductor Canal Block and Infiltration Between the Popliteal Artery and Capsule of the Knee and Perioperative Outcomes After Primary TKA?
- Optimal treatment for metastatic HER2+ breast cancer.
- Is there an optimal sequential order to androgen receptor axis therapeutics?
- Immersive Virtual Reality for Pain and Relaxation in Older Adults Following Elective Inpatient Abdominal Surgery: Single-Arm Study Examining Feasibility and Acceptability.
- Conceptual reflection on affirmative nursing as a professional field for the care of older gay men.
- Differences in Survival Associated With the First Antiseizure Medication in People With Dementia and Epilepsy.
- Cost-Effectiveness of Thrombectomy With or Without Alteplase in Large Vessel Occlusion Stroke: A Meta-Analysis Considering Time-to-Treatment.
Genomics
- Development of donkey milk fermented with Lactococcus lactis subsp. lactis CECT 31096 and characterization of the antioxidant and antihypertensive activity.
- Brassinosteroid-mediated shoot branching in tomato requires SRT1-dependent histone deacetylation.
- Leveraging long-read assemblies and machine learning to enhance short-read transposable element detection and genotyping.
- scGPD: single-cell informed gene panel design for targeted spatial transcriptomics.
- Multiomics profiling of zebrafish embryonic cell line PAC2 across growth phases to assess its relevance for toxicological studies.
- Protocol update to: Genome-wide interrogation of protein-DNA interactions in mammalian cells using ChIPmentation.
- Blocking apoptosis promotes survival and alters developmental dynamics of human retinal ganglion cells in retinal organoids.
- RNF126 and BRAP safeguard genome integrity after DNA damage in late mitosis.
- Extensive heterozygosity and genetic exchange among natural populations of Leishmania species.
- KPC-producing Klebsiella pneumoniae in Switzerland from 2024 to 2025: comparative genomics and cefiderocol resistance mechanisms analyses.
- Genomic and phenotypic analysis of multidrug-resistant Acinetobacter baumannii focusing on efflux pump activity and biofilm-associated genes.
- Plastome insights from the mistletoe Dendrophthoe pentandra (Loranthaceae) highlight gradual evolutionary footprints of parasitism in Santalales.
- Critical Questions in Genomic Diagnostics for Veterinary Oncology: What We Need to Know.
- Comparative functional genomics of Saccharomyces cerevisiae reveals genetic determinants of stress tolerance and ethanol fermentation.
- Loss of Pol32, a subunit of DNA polymerases δ and ζ, leads to different patterns of genome stability than direct impairment of these individual polymerases.
Immunology
- Novel therapeutic strategies leveraging T(H)9 cell anticancer functions.
- In-depth characterization analysis of a bispecific antibody acidic charge variant.
- ADCE-T02 - a Next Generation Antibody Drug Conjugate Targeting Tissue Factor Demonstrates Superior Preclinical Efficacy and Tolerability.
- Gene delivery of immunomodulatory cytokines to the lung preserves respiratory function during inflammatory challenge.
- The autoantigen TRIM21 assembles proinflammatory immune complexes after lytic cell death.
- Regional Lassa virus lineages select for divergent MHC-I repertoires in Mastomys natalensis rodents.
- Sexually transmitted infection prevalence and Neisseria gonorrhoeae antimicrobial resistance patterns in men who have sex with men with or without urethral discharge syndrome in Johannesburg, South Africa, 2024.
- Measuring vaccine effects on antibiotic use and antimicrobial resistance in low and middle-income countries: A scoping review of methodological approaches, data sources, metrics, and limitations.
- Multiomics profiling of zebrafish embryonic cell line PAC2 across growth phases to assess its relevance for toxicological studies.
- Multi-modal feature learning to prioritize ADCs with favorable half-life in mice.
- Optineurin modulates mTORC2/AKT/STAT3 signaling to control MHC class II expression and adaptive immunity against HSV-1.
- Structural and immunogenetic signatures guide CD4-mimetic HIV vaccine development.
- Native Top-Down Mass Spectrometry Combined with High-Resolution Charge Variant Analysis of Trastuzumab Originator and Biosimilars.
- Quantitative Host Cell Protein Analysis of Antibody-Based Protein Therapeutics Using the Orbitrap Astral Mass Spectrometer.
- Impact of lactate metabolism on antibody production in Chinese hamster ovary cells during fed-batch culture.
Microbiology
- Chemoproteomic Elucidation of β-Lactam Drug Targets in Mycobacterium abscessus.
- Diagnostic testing intensity for Legionnaires' disease: Spatio-temporal assessment and its effect on surveillance case reporting, Denmark, 2014-2022.
- Regional Lassa virus lineages select for divergent MHC-I repertoires in Mastomys natalensis rodents.
- Comparing Asymptomatic vs Symptomatic Bacterial Vaginosis: Clinical Characteristics, Vaginal Microbiota, and Lactic Acid Profiles.
- Coriander leaf essential oil as an immunomodulator: Enhancing NF-κB-driven RAW246.7 murine macrophages response to Candida albicans.
- Identification and detection of genetic markers associated with antimicrobial susceptibility and evaluation of efflux pump mechanisms in Mycoplasma iowae.
- Shared Genetics Implicate Gut Microbiota and Immunity in Anterior Uveitis and Inflammatory Bowel Disease.
- Effects of salinity and broad-range antibiotics on oxalate production, transport, and degradation in Poecilia latipinna.
- Dynamic heterogeneity in an E. coli stress response regulon mediates gene activation and antimicrobial peptide tolerance.
- Microbial damper: Rhizosphere microbiome mitigates stress-induced plant growth-defense conflicts.
- Nutrient balance regulates soil microbial health under long-term fertilization.
- Low expression levels of the conserved nuclear histone acetyltransferase 1 restrict virus infection in plants.
- An ensemble pipeline, PhageHost, for phage tail fiber discovery and accurate Klebsiella pneumoniae host prediction using protein language models.
- Outcomes of Post-Traumatic Pediatric Endophthalmitis Following 25-Gauge Pars Plana Vitrectomy.
- Identification of Epicoccum nigrum causing soybean leaf blight in Northeast China and its sensitivity to selected fungicides.
Evolutionary Biology
- Evolution of neuromuscular choristoma into neuromuscular choristoma-associated desmoid-type fibromatosis: evidence from serial MRI.
- Surface-Tuned Ti(3)C(2)T(x) MXene Nanofiber Catalyst Decorated with Electrodeposited Nickel for High-Performance Hydrogen Evolution in Alkaline Media.
- Efficient Bayesian Phylogenetics under the Infinite Sites Model.
- Distinct mechanisms decommission redundant enhancers to facilitate phenotypic evolution.
- AR and Beyond: ctDNA Maps Resistance Evolution in mCRPC.
- Defect-Engineered IrO(x)@Perovskite Heterostructures via Thermal Reconstruction for Acid-Stable Oxygen Evolution Catalysis.
- RNA-templated diversity generation via reverse transcription and homologous recombination: an evolutionary hypothesis.
- Evolution of a trait distributed over a large fragmented population: propagation of chaos meets adaptive dynamics.
- Interface engineering of fcc-RuCo@hcp-Ru core-shell nanoplates for efficient industrial alkaline hydrogen evolution.
- W(2)N(3) nanodot/2D C(3)N(4) heterostructures with interfacial covalent bonding toward Pt-free photocatalytic hydrogen evolution.
- The evolution of azole resistance through a reduced spore dormancy pathway associated with loss of SUMOylation function in Fusarium graminearum.
- Oxygen Vacancy Evolution at Li(x)V(2)O(5)/LiPON Solid State Electrochemical Interfaces Using Depth Resolved Cathodoluminescence Spectroscopy.
- Self-Disproportionation-Induced H-Adsorption/Desorption Zones in Amorphous Nickel Boride Cocatalyst for Efficient Photocatalytic Hydrogen Evolution.
- The evolution and improvement of medical-vocational education policies: a perspective based on the IAD framework.
- Design and evolution of a triad twisted string actuator for controlling a two degrees of freedom joint: improving performance and simulating active transmission adjustment.
Molecular Ecology
- Environmental Fluctuations Are Insufficient to Explain High Coral Biodiversity: A Test of Five Storage Effect Pathways.
- Integrating SolVES and social media analytics to quantify social value spatial patterns and driving mechanisms in mega-scale green spaces.
- Extensive heterozygosity and genetic exchange among natural populations of Leishmania species.
- Dynamic stressor regimes drive shifts in biofilm-associated parasites.
- Towards a robust assessment of ecosystem services provided by kelp habitats: a case study from Plymouth Sound, southwest UK.
- Corals and Reef-Dwelling Fish Regulate Carbon Storage and Cycling Processes in Coral Reef Ecosystems.
- Distribution of ABO and Rh Blood Groups and Allele Frequencies in the Bhutanese Population: A Retrospective Cross-Sectional Study.
- Ecological Divergence Governs Plant Resilience to Compound Salinity-Waterlogging Stress Under Global Change.
- Editorial: Microbes and cultural heritage: from biodiversity to applications.
- Environmental control of anthraquinone-flavonoid accumulation in wild plant species: biosynthetic pathways, ecological drivers, and adaptive significance.
- Inference of population demographic history captures differing evolutionary signals based on the number of individuals in the dataset.
- Soil ascomycetes from Spain. XV. New and noteworthy fungi from Gran Canaria Island (Canary Islands archipelago).
- When the local meets the global: models and challenges of primate conservation in the Fazao-Malfakassa National Park, Togo.
- Reconsidering the role of introduced species in the climate-affected and highly invaded eastern Mediterranean.
- Navigating Cetacean Mitochondrial Genome Data: Identifying Coverage and Deficiencies in Public Repositories.
arXiv Physics
- PDF Superstatistical Approach to Turbulent Circulation Fluctuations
- PDF Motif-based filtrations for persistent homology: A framework for graph isomorphism and property prediction
- PDF Studies of the Modular COsmic Ray Detector (MCORD) using an automatic temperature control loop to maintain constant gain parameters of semiconductor SiPM photomultipliers
- PDF Blocking of 2D bistable reaction-diffusion fronts by obstacles
- PDF 3D Finite Element-Based Multiphysics Simulation of a Shape Memory Alloy Hybrid Composite Module
- PDF Picometer-Scale Spatial Symmetry Breaking in Active Transmissive Metasurfaces
- PDF Minimum energy and photon content in PT symmetric metamaterials
- PDF Deformation of Bacterial Cell Membranes by Action of Metal Surface under Plasmon Resonance Condition
- PDF Toward Accurate RIXS Spectra at Heavy Element Edges: A Relativistic Four-Component and Exact Two-Component TDDFT Approach
- PDF Asymptotic gauge-invariant Hybrid High-Order method for magnetic Schrödinger equations
- PDF Roadmap on Attosecond Science
- PDF Optical Modulation Due to Energy Exchange Between Photonic and Exciton Modes in the Intermediate Coupling Regime
- PDF Laboratory evidence of electron pressure anisotropy driving plasmoid mediated magnetic reconnection
- PDF On nonlinear saturation of toroidal Alfvén eigenmode due to thermal plasma nonlinearities
- PDF Thermodynamic Geometry of Relaxation
arXiv Mathematics
- PDF Erdős's diameter conjecture for separated distances fails in high dimensions
- PDF Diameter bounds for arbitrary finite groups and applications
- PDF Ensembles of random quantum states tunable from volume law to area law
- PDF Borel--Bernstein and Hirst-type Theorems for Nearest-Integer Complex Continued Fractions over Euclidean Imaginary Quadratic Fields
- PDF Generalization of Pearl's Front-Door Criterion
- PDF Matrices over Finite Fields of Characteristic 2 as Sums of Diagonalizable and Square-Zero Matrices
- PDF Structural interpretability in SVMs with truncated orthogonal polynomial kernels
- PDF Cloning is as Hard as Learning for Stabilizer States
- PDF Motif-based filtrations for persistent homology: A framework for graph isomorphism and property prediction
- PDF Computing the free energy of quantum Coulomb gases and molecules via quantum Gibbs sampling
- PDF Detecting Regime Transitions in Dynamical Systems via the Mixup Euler Characteristic Profile
- PDF Convexity and concavity in Banach lattices
- PDF A matroidal twist on a formula of Brion
- PDF Tube-Based Robust Data-Driven Predictive Control
- PDF Blocking of 2D bistable reaction-diffusion fronts by obstacles
arXiv Computer Science
- PDF Bidirectional Cross-Modal Prompting for Event-Frame Asymmetric Stereo
- PDF LeapAlign: Post-Training Flow Matching Models at Any Generation Step by Building Two-Step Trajectories
- PDF TokenLight: Precise Lighting Control in Images using Attribute Tokens
- PDF MM-WebAgent: A Hierarchical Multimodal Web Agent for Webpage Generation
- PDF Heuristic Search for Minimum-Distance Upper-Bound Witnesses in Quantum APM-LDPC Codes
- PDF RAD-2: Scaling Reinforcement Learning in a Generator-Discriminator Framework
- PDF Generalization in LLM Problem Solving: The Case of the Shortest Path
- PDF Diagnosing LLM Judge Reliability: Conformal Prediction Sets and Transitivity Violations
- PDF Think in Latent Thoughts: A New Paradigm for Gloss-Free Sign Language Translation
- PDF Super-Constant Weight Dicke States in Constant Depth Without Fanout
- PDF AnimationBench: Are Video Models Good at Character-Centric Animation?
- PDF Benchmarking Optimizers for MLPs in Tabular Deep Learning
- PDF Reed--Muller Codes Achieve the Symmetric Capacity on Finite-State Channels
- PDF How Do LLMs and VLMs Understand Viewpoint Rotation Without Vision? An Interpretability Study
- PDF AD4AD: Benchmarking Visual Anomaly Detection Models for Safer Autonomous Driving
arXiv Quantitative Biology
- PDF Unity and Diversity of Intracellular pH Maintenance Mechanisms
- PDF Cell-cell adhesion cannot sustain extended follower streams in a minimal non-local model of leader-follower migration
- PDF Goxpyriment: A Go Framework for Behavioral and Cognitive Experiments
- PDF PUFFIN: Protein Unit Discovery with Functional Supervision
- PDF Robust Evaluation of Neural Encoding Models via ground-truth approximation
- PDF Absolute Concentration Robustness of Non-Redundant Zero-One Networks with Conservation Laws
- PDF Synchronized disease and behavioural dynamics in weakly coupled populations
- PDF Mamba-SSM with LLM Reasoning for Biomarker Discovery: Causal Feature Refinement via Chain-of-Thought Gene Evaluation
- PDF Combining Bayesian and Frequentist Inference for Laboratory-Specific Performance Guarantees in Copy Number Variation Detection
- PDF Working Memory in a Recurrent Spiking Neural Networks With Heterogeneous Synaptic Delays
- PDF A deep learning framework for glomeruli segmentation with boundary attention
- PDF Continual Learning for fMRI-Based Brain Disorder Diagnosis via Functional Connectivity Matrices Generative Replay
- PDF BOAT: Navigating the Sea of In Silico Predictors for Antibody Design via Multi-Objective Bayesian Optimization
- PDF A generative model for bipartite gene-sharing networks
- PDF Modeling of Self-sustained Neuron Population without External Stimulus
arXiv Quantitative Finance
- PDF LR-Robot: An Human-in-the-Loop LLM Framework for Systematic Literature Reviews with Applications in Financial Research
- PDF The Acoustic Camouflage Phenomenon: Re-evaluating Speech Features for Financial Risk Prediction
- PDF Higher-order ATM asymptotics for the CGMY model via the characteristic function
- PDF Interpretable Systematic Risk around the Clock
- PDF Against a Universal Trading Strategy: No-Arbitrage, No-Free-Lunch, and Adversarial Cantor Diagonalization
- PDF Topological Complexity and Phase Space Stability: A Persistent Homology Approach to Cryptocurrency Risk
- PDF Which Voices Move Markets? Speaker Identity and the Cross-Section of Post-Earnings Returns
- PDF Forecasting Oil Prices Across the Distribution: A Quantile VAR Approach
- PDF Emergence of Statistical Financial Factors by a Diffusion Process
- PDF A Decomposition Method for LQ Conditional McKean-Vlasov Control Problems with Random Coefficients
- PDF When Forecast Accuracy Fails: Rank Correlation and Decision Quality in Multi-Market Battery Storage Optimization
- PDF Risk-Constrained Kelly for Mutually Exclusive Outcomes: CRRA Support Invariance and Logarithmic One-Dimensional Calibration
- PDF A Counterfactual Diagnostic Framework for Explaining KS Deterioration in Credit Risk Model Validation
- PDF OOM-RL: Out-of-Money Reinforcement Learning Market-Driven Alignment for LLM-Based Multi-Agent Systems
- PDF A Herding-Based Model of Technological Transfer and Economic Convergence: Evidence from Central and Eastern Europe